Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400076107 | Potato | cytosol | 88.06 | 41.36 |
| Solyc01g099400.2.1 | Tomato | mitochondrion | 51.24 | 32.49 |
| Solyc04g076720.1.1 | Tomato | plastid | 38.31 | 31.3 |
| Solyc08g006010.2.1 | Tomato | cytosol | 63.68 | 30.55 |
| Solyc06g048510.2.1 | Tomato | cytosol | 53.23 | 25.72 |
| Solyc07g006120.2.1 | Tomato | cytosol | 25.37 | 13.97 |
Protein Annotations
| MapMan:19.3.2.1.3 | GO:GO:0000422 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 | GO:GO:0006497 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0019898 | GO:GO:0032266 | GO:GO:0034045 |
| GO:GO:0034497 | GO:GO:0044804 | GO:GO:0080025 | UniProt:K4CMF4 | PANTHER:PTHR11227 | PANTHER:PTHR11227:SF33 |
| SUPFAM:SSF50978 | EnsemblPlantsGene:Solyc08g074340.1 | EnsemblPlants:Solyc08g074340.1.1 | UniParc:UPI000276AEEB | InterPro:WD40_repeat_dom_sf | : |
Description
No Description!
Coordinates
chr8:-:58465962..58469732
Molecular Weight (calculated)
22656.5 Da
IEP (calculated)
6.761
GRAVY (calculated)
0.153
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGAFCFVTR CSMLDVRKDC LVVVLEHKIF VYNFSNLELL FHIESTTNPK GLCEVSQTAD QLVLVCPGLQ KGQVWVKHSA SKSMKFIVAH YSVLVCFALT
101: REGILLATAS TKGTLIRIFN TLEGTLLQEA LPKYFSSEWS VAQFRLPGVS HYIVTFGNEN NTLIILGWDG SFFRCKFDPA SSKEMTQLEY HNFLDPEEPC
201: N
101: REGILLATAS TKGTLIRIFN TLEGTLLQEA LPKYFSSEWS VAQFRLPGVS HYIVTFGNEN NTLIILGWDG SFFRCKFDPA SSKEMTQLEY HNFLDPEEPC
201: N
001: MSSTVSNPQG ILQPGSFLLP ESESMKKEEA ELVSVCWNQD SSCFAAGTSH GFRIYNCEPF KETFRRELKD GGFKIVEMLF RSNILALVGG GPNSQYPSSK
101: VLIWDDHQSR CISEFAFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIETQANPR GLCCLSHHSN TSVLACPGLN RGEIRVEHFG LNMVQIINAH
201: DSSIACMTLT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGVDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVV GEDSYSTENG ALLTQQNYSN
301: SLQGLVSPTI GTNPGSSLSF MRGVLPKYFS SEWSYAQFHV SEVTQFFAAF GSNNTVAIIG MDGSFYRCSF DPVNGGEMGQ LEYIHFMKMD NRP
101: VLIWDDHQSR CISEFAFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIETQANPR GLCCLSHHSN TSVLACPGLN RGEIRVEHFG LNMVQIINAH
201: DSSIACMTLT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGVDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVV GEDSYSTENG ALLTQQNYSN
301: SLQGLVSPTI GTNPGSSLSF MRGVLPKYFS SEWSYAQFHV SEVTQFFAAF GSNNTVAIIG MDGSFYRCSF DPVNGGEMGQ LEYIHFMKMD NRP
Arabidopsis Description
ATG18CAutophagy-related protein 18c [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.