CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72365	Soybean	cytosol	93.5	93.75
KRH07770	Soybean	plastid	48.51	85.65
KRH33489	Soybean	cytosol	33.6	84.93
VIT_11s0037g00970.t01	Wine grape	cytosol	55.28	77.57
VIT_03s0091g00190.t01	Wine grape	plastid	18.7	73.4
AT4G30510.1	Thale cress	cytosol	68.83	69.4
PGSC0003DMT400028996	Potato	cytosol	67.48	68.22
Solyc07g006120.2.1	Tomato	cytosol	67.21	67.95
CDX72248	Canola	plastid	67.48	67.85
CDY39210	Canola	cytosol, plastid	67.48	67.85
Bra024070.1-P	Field mustard	plastid	67.21	67.76
GSMUA_Achr9P13430_001	Banana	plastid	62.33	62.5
Zm00001d018355_P005	Maize	cytosol, plastid	58.81	58.49
KXG31257	Sorghum	cytosol	58.54	58.22
Os02t0791800-01	Rice	cytosol	55.83	55.08
TraesCS6B01G386200.1	Wheat	cytosol, mitochondrion, plastid	55.56	54.96
TraesCS6A01G353600.1	Wheat	cytosol, mitochondrion, plastid	55.28	54.69
TraesCS6D01G335900.1	Wheat	cytosol, mitochondrion, plastid	55.28	54.69
HORVU6Hr1G084430.3	Barley	cytosol	55.56	45.96
KRG92887	Soybean	cytosol	25.75	25.2
KRH68154	Soybean	cytosol, plastid	28.46	24.82
KRH33898	Soybean	nucleus	25.2	24.73
KRG96415	Soybean	cytosol, plastid	28.18	24.59
KRH64240	Soybean	cytosol, plastid	26.02	22.91
KRH53692	Soybean	plastid	25.75	22.62
KRH50149	Soybean	cytosol, mitochondrion	3.79	20.59

Protein Annotations

EntrezGene:100820465	MapMan:19.3.2.1.3	Gene3D:2.130.10.10	UniProt:A0A0R0FIP9	EMBL:ACUP02010333	EnsemblPlantsGene:GLYMA_17G070200
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	EnsemblPlants:KRH02984
ProteinID:KRH02984	ProteinID:KRH02984.1	PANTHER:PTHR11227	PANTHER:PTHR11227:SF17	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0003DE9AE3	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	:	:

Description

hypothetical protein

Coordinates

chr17:-:5496119..5501431

Molecular Weight (calculated)

40057.0 Da

IEP (calculated)

7.937

GRAVY (calculated)

0.164

Length

369 amino acids

Sequence
(BLAST)

001: MANHSSSPSL LCASFNQDHS YFAVGTRDGV RIFDTNTGRL CYERAVGAFV IAEMLFSSSL LAIVGAGDQP SLSPRRLCLF NTTTGAALRE LNFLTSILAV
101: RMNRQRLIVI LQDKAYVYEI NSLTILDTID TVPNIKGLCA FSPCLDACYL ALPASTTKGS ALLYNVMDCH LHCEIEAHRS PLAAMVLSSN GMYIATASEQ
201: GTIIRVHLVS DATKSYSFRR GTYPSTIFSL SFGPSKQLPD ILAASSSSGS IHLFTLGFAS HPRCRSKRSS GFLGSIIPGA VNDVLDPAYH HVLHNAVSAG
301: VKSHAIIRKV ENVTNSSSSE LLACRAIMSV ITYNGYFQEY NLSIDAQNEL SWSLVREFNL LTATMDKAS

Best Arabidopsis Sequence Match ( AT4G30510.1 )
(BLAST)

001: MANLSSLPSP IYCVSFNQDN SGFAISWKDS FKIFDSTTGR LCYERAAGAF VIVEMLYSSD LLAIVGAGEQ ASLSPRRLCL FKTTTGLPLR ELNFLTSILA
101: VRMNKKRLVV VLLEKTFVYD LNTLVMLDTI DTVPNPKGLS AFSPSLEGCY LAVPASTTKG SVLVYNVMDL QSHSEIDAHR SPLAAIALSS NGMYIATGSE
201: QGTLIRVHLV SEATKSYSFR RGTYPSTIYS LSFGPSTQLP DILIATSSSG SIHAFSLSLA INQRSKRSTS FLGSVLPDSV SDALDPAHHH VLQNAVSSGI
301: RSYAVVRKID KLEGTSSPSH FTSLRATVSV ITYNGYFQEY TLSINNKNES LWTLEREFNL FSITTG

Arabidopsis Description

ATG18BAutophagy-related protein 18b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1Q8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.