Factsheet for Bra024070.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39210	Canola	cytosol, plastid	99.45	99.18
AT4G30510.1	Thale cress	cytosol	90.98	90.98
VIT_11s0037g00970.t01	Wine grape	cytosol	55.74	77.57
VIT_03s0091g00190.t01	Wine grape	plastid	18.31	71.28
KRH02984	Soybean	cytosol	67.76	67.21
KRH72365	Soybean	cytosol	67.49	67.12
Solyc07g006120.2.1	Tomato	cytosol	66.67	66.85
PGSC0003DMT400028996	Potato	cytosol	66.12	66.3
KRH07770	Soybean	plastid	35.79	62.68
GSMUA_Achr9P13430_001	Banana	plastid	60.38	60.05
KRH33489	Soybean	cytosol	23.77	59.59
Zm00001d018355_P005	Maize	cytosol, plastid	55.74	54.99
KXG31257	Sorghum	cytosol	55.19	54.45
TraesCS6B01G386200.1	Wheat	cytosol, mitochondrion, plastid	53.83	52.81
TraesCS6A01G353600.1	Wheat	cytosol, mitochondrion, plastid	53.55	52.55
TraesCS6D01G335900.1	Wheat	cytosol, mitochondrion, plastid	53.55	52.55
Os02t0791800-01	Rice	cytosol	52.19	51.07
HORVU6Hr1G084430.3	Barley	cytosol	53.83	44.17
Bra014393.1-P	Field mustard	cytosol	28.14	25.18
Bra003509.1-P	Field mustard	nucleus	28.42	25.0
Bra005844.1-P	Field mustard	cytosol	24.32	23.61
Bra016968.1-P	Field mustard	cytosol, plastid	26.23	23.53
Bra007700.1-P	Field mustard	nucleus, plastid	27.05	23.02

Protein Annotations

EnsemblPlants:Bra024070.1	EnsemblPlants:Bra024070.1-P	EnsemblPlantsGene:Bra024070	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf
PANTHER:PTHR11227	PANTHER:PTHR11227:SF17	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002540E27	UniProt:M4E5L6
MapMan:19.3.2.1.3	:	:	:	:	:

Description

AT4G30510 (E=4e-161) ATATG18B, ATG18B | AtATG18b

Coordinates

chrA03:-:27847138..27849239

Molecular Weight (calculated)

39686.3 Da

IEP (calculated)

8.651

GRAVY (calculated)

0.073

Length

366 amino acids

Sequence
(BLAST)

001: MANQSSPSSS IYCASFNQDN SGFAISSKDS FKIFDSTTGR LCYKRAAGAF VIVEMLYSSD LLALVGAGEQ ASLSPRRLCL FNTTKGSPLK ELNFLTSILA
101: VRMNKKRLVV VLVEKTFVYD LNTLVMLDTI DTVPNPKGLC AFSPSLEGCF LAVPASTTKG AVLVYNVMDL QSHSEIDAHR SPLAAIALSS NGMYIATASE
201: QGTLIRVHLV SESTKSYSFR RGTYPSTIYS LSFGPSTQLP DILIATSSSG SVHAFSLMLA INQRSKRSTS FLGSVLPDSV SDALDPAHHH VLQNAVSSGV
301: RSYAVVRKVD KLEGTSSPSQ FTSIRATVSV ITYSGYFQEY TMSINSKNES LWTLEREFNL YPVISS

Best Arabidopsis Sequence Match ( AT4G30510.1 )
(BLAST)

001: MANLSSLPSP IYCVSFNQDN SGFAISWKDS FKIFDSTTGR LCYERAAGAF VIVEMLYSSD LLAIVGAGEQ ASLSPRRLCL FKTTTGLPLR ELNFLTSILA
101: VRMNKKRLVV VLLEKTFVYD LNTLVMLDTI DTVPNPKGLS AFSPSLEGCY LAVPASTTKG SVLVYNVMDL QSHSEIDAHR SPLAAIALSS NGMYIATGSE
201: QGTLIRVHLV SEATKSYSFR RGTYPSTIYS LSFGPSTQLP DILIATSSSG SIHAFSLSLA INQRSKRSTS FLGSVLPDSV SDALDPAHHH VLQNAVSSGI
301: RSYAVVRKID KLEGTSSPSH FTSLRATVSV ITYNGYFQEY TLSINNKNES LWTLEREFNL FSITTG

Arabidopsis Description

ATG18BAutophagy-related protein 18b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1Q8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.