CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018355_P005	Maize	cytosol, plastid	96.23	96.23
TraesCS6A01G353600.1	Wheat	cytosol, mitochondrion, plastid	77.09	76.68
TraesCS6B01G386200.1	Wheat	cytosol, mitochondrion, plastid	77.09	76.68
TraesCS6D01G335900.1	Wheat	cytosol, mitochondrion, plastid	77.09	76.68
Os02t0791800-01	Rice	cytosol	76.55	75.94
VIT_11s0037g00970.t01	Wine grape	cytosol	46.36	65.4
HORVU6Hr1G084430.3	Barley	cytosol	77.36	64.35
VIT_03s0091g00190.t01	Wine grape	plastid	15.9	62.77
GSMUA_Achr9P13430_001	Banana	plastid	61.46	61.96
KRH02984	Soybean	cytosol	58.22	58.54
KRH72365	Soybean	cytosol	57.14	57.61
KRH33489	Soybean	cytosol	22.64	57.53
AT4G30510.1	Thale cress	cytosol	56.33	57.1
KRH07770	Soybean	plastid	31.54	55.98
CDY39210	Canola	cytosol, plastid	54.72	55.31
CDX72248	Canola	plastid	54.72	55.31
Bra024070.1-P	Field mustard	plastid	54.45	55.19
Solyc07g006120.2.1	Tomato	cytosol	54.18	55.07
PGSC0003DMT400028996	Potato	cytosol	53.91	54.79
OQU86240	Sorghum	cytosol	27.49	24.29
EES04163	Sorghum	cytosol	29.11	23.68
KXG21420	Sorghum	peroxisome	23.72	22.06
OQU90455	Sorghum	cytosol, mitochondrion	20.22	18.56

Protein Annotations

MapMan:19.3.2.1.3	Gene3D:2.130.10.10	EntrezGene:8084671	UniProt:A0A194YSU3	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0031463	InterPro:IPR001680	InterPro:IPR015943	EnsemblPlants:KXG31257	ProteinID:KXG31257
ProteinID:KXG31257.1	PANTHER:PTHR11227	PANTHER:PTHR11227:SF17	SMART:SM00320	EnsemblPlantsGene:SORBI_3004G327100	SUPFAM:SSF50978
UniParc:UPI0007F23664	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:66183285..66190962

Molecular Weight (calculated)

40574.5 Da

IEP (calculated)

8.390

GRAVY (calculated)

-0.037

Length

371 amino acids

Sequence
(BLAST)

001: MASSSSPSQI ICVSFNQDNS MFSVGTKDGF KIFDARNGRL CYEKNLGGFN IVEMLFGTNL LAIVGTGEQP AMSPRRLCLF NTKTGASKRD LNFKTSILAV
101: RLSRKRLVVV LQDRTFVYDL NSTTILDEIE TVPNTKGLCA FAPNSEECYL ALPASTSKGS ALVYKASKPE LICQIDAHQA PLAAMVFSLN GLYLATASEK
201: GTMIRVHLVA QATKSHSFRR GTYPSTIYSL TFSPSVDLPD VLVATSSSGS LHMFFLDASR NARRQANTLL SSVIPGSVTD ALDPANHHVI HHVVTADIKS
301: CLAVHSVENS QNSSKFPALK TVIYIVTHDG YFREYLISTT KSNESSWLLL REFNLLDACS GSPKQNEQHI D

Best Arabidopsis Sequence Match ( AT4G30510.1 )
(BLAST)

001: MANLSSLPSP IYCVSFNQDN SGFAISWKDS FKIFDSTTGR LCYERAAGAF VIVEMLYSSD LLAIVGAGEQ ASLSPRRLCL FKTTTGLPLR ELNFLTSILA
101: VRMNKKRLVV VLLEKTFVYD LNTLVMLDTI DTVPNPKGLS AFSPSLEGCY LAVPASTTKG SVLVYNVMDL QSHSEIDAHR SPLAAIALSS NGMYIATGSE
201: QGTLIRVHLV SEATKSYSFR RGTYPSTIYS LSFGPSTQLP DILIATSSSG SIHAFSLSLA INQRSKRSTS FLGSVLPDSV SDALDPAHHH VLQNAVSSGI
301: RSYAVVRKID KLEGTSSPSH FTSLRATVSV ITYNGYFQEY TLSINNKNES LWTLEREFNL FSITTG

Arabidopsis Description

ATG18BAutophagy-related protein 18b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1Q8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.