CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02984	Soybean	cytosol	93.75	93.5
KRH07770	Soybean	plastid	49.46	87.08
KRH33489	Soybean	cytosol	32.34	81.51
VIT_11s0037g00970.t01	Wine grape	cytosol	54.89	76.81
VIT_03s0091g00190.t01	Wine grape	plastid	18.75	73.4
AT4G30510.1	Thale cress	cytosol	68.21	68.58
CDX72248	Canola	plastid	67.39	67.57
CDY39210	Canola	cytosol, plastid	67.39	67.57
Bra024070.1-P	Field mustard	plastid	67.12	67.49
PGSC0003DMT400028996	Potato	cytosol	66.58	67.12
Solyc07g006120.2.1	Tomato	cytosol	66.3	66.85
GSMUA_Achr9P13430_001	Banana	plastid	62.5	62.5
Zm00001d018355_P005	Maize	cytosol, plastid	57.88	57.41
KXG31257	Sorghum	cytosol	57.61	57.14
TraesCS6B01G386200.1	Wheat	cytosol, mitochondrion, plastid	55.98	55.23
Os02t0791800-01	Rice	cytosol	55.98	55.08
TraesCS6A01G353600.1	Wheat	cytosol, mitochondrion, plastid	55.71	54.96
TraesCS6D01G335900.1	Wheat	cytosol, mitochondrion, plastid	55.71	54.96
HORVU6Hr1G084430.3	Barley	cytosol	55.98	46.19
KRG92887	Soybean	cytosol	25.0	24.4
KRH68154	Soybean	cytosol, plastid	27.72	24.11
KRH33898	Soybean	nucleus	24.46	23.94
KRG96415	Soybean	cytosol, plastid	27.45	23.88
KRH64240	Soybean	cytosol, plastid	26.09	22.91
KRH53692	Soybean	plastid	25.82	22.62
KRH50149	Soybean	cytosol, mitochondrion	3.8	20.59

Protein Annotations

EntrezGene:100794908	MapMan:19.3.2.1.3	Gene3D:2.130.10.10	EMBL:ACUP02001203	EnsemblPlantsGene:GLYMA_02G207500	GO:GO:0000422
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0006497	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0019538	GO:GO:0019898	GO:GO:0032266	GO:GO:0034045	GO:GO:0034497	GO:GO:0044804
GO:GO:0080025	InterPro:IPR001680	InterPro:IPR015943	UniProt:K7K9T5	EnsemblPlants:KRH72365	ProteinID:KRH72365
ProteinID:KRH72365.1	PANTHER:PTHR11227	PANTHER:PTHR11227:SF17	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002337564
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:39248403..39253677

Molecular Weight (calculated)

39971.9 Da

IEP (calculated)

8.221

GRAVY (calculated)

0.141

Length

368 amino acids

Sequence
(BLAST)

001: MTNQSSSPSL LCASFNQDHS YFAVGTRDGV RIFDANTGRL CYERAVGAFV IAEMLFSSNL LAIVGAGHQP SLSPRRLCLF NTTTGAALRE LNFLTSILAV
101: RMNRQRLIVI LQDKAYIYEI NSLTILDTID TVPNIKGLCA FSPSLDACYL ALPASTTKGS ALLYNVMECH LHCEIEAHRS PLAAMVLSSN GMYIATASEQ
201: GTIIRVHLVS DATKSYSFRR GTYPSTIFSV SFGPSKRLPD ILAASSSSGS IHLFTLGFAS RPSSSKRSSG FLGSIIPDAV HDVLDPAHHH VLHNAVPAGV
301: KSYAVIRKVE NVTNSSSSEL LACRAIMSVI TYNGYFQEYN LSIDAHNELS WSLGRQFNLL TVTMDKAS

Best Arabidopsis Sequence Match ( AT4G30510.1 )
(BLAST)

001: MANLSSLPSP IYCVSFNQDN SGFAISWKDS FKIFDSTTGR LCYERAAGAF VIVEMLYSSD LLAIVGAGEQ ASLSPRRLCL FKTTTGLPLR ELNFLTSILA
101: VRMNKKRLVV VLLEKTFVYD LNTLVMLDTI DTVPNPKGLS AFSPSLEGCY LAVPASTTKG SVLVYNVMDL QSHSEIDAHR SPLAAIALSS NGMYIATGSE
201: QGTLIRVHLV SEATKSYSFR RGTYPSTIYS LSFGPSTQLP DILIATSSSG SIHAFSLSLA INQRSKRSTS FLGSVLPDSV SDALDPAHHH VLQNAVSSGI
301: RSYAVVRKID KLEGTSSPSH FTSLRATVSV ITYNGYFQEY TLSINNKNES LWTLEREFNL FSITTG

Arabidopsis Description

ATG18BAutophagy-related protein 18b [Source:UniProtKB/Swiss-Prot;Acc:Q8H1Q8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.