CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98195
KRH17125
KRH30155
KRH72765

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62770.1	KRG98195	AT2G38470.1	21395886
AT3G62770.1	KRH17125	AT2G38470.1	21395886
AT3G62770.1	KRH30155	AT2G38470.1	21395886
AT3G62770.1	KRH72765	AT2G38470.1	21395886

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92887	Soybean	cytosol	58.82	10.61
KRH68154	Soybean	cytosol, plastid	64.71	10.4
KRG96415	Soybean	cytosol, plastid	64.71	10.4
KRH33898	Soybean	nucleus	57.35	10.37
KRH64240	Soybean	cytosol, plastid	60.29	9.79
KRH53692	Soybean	plastid	60.29	9.76
VIT_07s0104g01780.t01	Wine grape	plastid	57.35	8.88
Bra014393.1-P	Field mustard	cytosol	52.94	8.8
CDX89148	Canola	cytosol	52.94	8.67
CDX67903	Canola	nucleus	51.47	8.66
CDX93962	Canola	cytosol	52.94	8.59
VIT_07s0104g01790.t01	Wine grape	plastid	52.94	8.49
CDX76661	Canola	plastid	52.94	8.49
AT3G62770.1	Thale cress	nucleus, plastid	52.94	8.47
Bra003509.1-P	Field mustard	nucleus	51.47	8.41
Bra007700.1-P	Field mustard	nucleus, plastid	52.94	8.37
CDY11447	Canola	nucleus	52.94	8.33
CDY25117	Canola	cytosol, plastid	51.47	8.16
KRH72365	Soybean	cytosol	20.59	3.8
KRH02984	Soybean	cytosol	20.59	3.79
KRH33489	Soybean	cytosol	2.94	1.37
KRH07770	Soybean	plastid	0.0	0.0

Protein Annotations

EMBL:ACUP02004664	EnsemblPlants:KRH50149	EnsemblPlantsGene:GLYMA_07G203900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR11227	PANTHER:PTHR11227:SF45
ProteinID:KRH50149	ProteinID:KRH50149.1	SEG:seg	SUPFAM:SSF50978	TMHMM:TMhelix	UniParc:UPI0006ED69ED
UniProt:A0A0R0JCG3	MapMan:19.3.2.1.3	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:37321073..37321488

Molecular Weight (calculated)

7715.5 Da

IEP (calculated)

10.180

GRAVY (calculated)

0.513

Length

68 amino acids

Sequence
(BLAST)

1: MKTKFISTHD SRIACFTLTL NAQLLATAST KGTLIHIFKT NHGSFLREVY FFSCFSLFAS KLVYSFLV

Best Arabidopsis Sequence Match ( AT3G62770.3 )
(BLAST)

001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGR

Arabidopsis Description

ATG18AAutophagy-related protein 18a [Source:UniProtKB/Swiss-Prot;Acc:Q93VB2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.