CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96415
KRH00834
KRH06592
KRH40392
KRH43402
KRH48074
KRH50149
KRH53873
KRH59551
KRH64076
KRH68154

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38470.1	KRH43402	AT3G18690.1	15990873
AT2G38470.1	KRH53873	AT3G18690.1	15990873
AT2G38470.1	KRH59551	AT3G18690.1	15990873
AT2G38470.1	KRH64076	AT3G18690.1	15990873
AT2G38470.1	KRH43402	AT3G18690.1	18650934
AT2G38470.1	KRH53873	AT3G18690.1	18650934
AT2G38470.1	KRH59551	AT3G18690.1	18650934
AT2G38470.1	KRH64076	AT3G18690.1	18650934
AT2G38470.1	KRH43402	AT3G18690.1	21203436
AT2G38470.1	KRH53873	AT3G18690.1	21203436
AT2G38470.1	KRH59551	AT3G18690.1	21203436
AT2G38470.1	KRH64076	AT3G18690.1	21203436
AT2G38470.1	KRG96415	AT3G62770.1	21395886
AT2G38470.1	KRH50149	AT3G62770.1	21395886
AT2G38470.1	KRH68154	AT3G62770.1	21395886
AT2G38470.1	KRH00834	AT4G01370.1	18650934
AT2G38470.1	KRH06592	AT4G01370.1	18650934
AT2G38470.1	KRH40392	AT4G01370.1	18650934
AT2G38470.1	KRH48074	AT4G01370.1	18650934

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30155	Soybean	nucleus	91.14	90.15
KRH17125	Soybean	nucleus	68.45	64.52
KRH72765	Soybean	nucleus	68.63	64.14
VIT_06s0004g07500.t01	Wine grape	nucleus	62.18	55.89
Solyc06g066370.2.1	Tomato	nucleus	54.24	54.95
PGSC0003DMT400043204	Potato	nucleus	54.06	54.87
GSMUA_Achr3P09940_001	Banana	nucleus	36.35	53.83
GSMUA_Achr6P32720_001	Banana	nucleus	42.62	50.66
Bra005104.1-P	Field mustard	nucleus	41.51	49.23
GSMUA_Achr11P...	Banana	nucleus	42.07	48.93
CDY07729	Canola	nucleus	41.88	47.99
Bra017117.1-P	Field mustard	nucleus	40.96	47.95
Bra000064.1-P	Field mustard	nucleus	41.7	47.78
CDY65564	Canola	nucleus, plastid	40.96	47.13
CDX91470	Canola	nucleus, plastid	41.33	47.06
CDY69941	Canola	nucleus, plastid	41.14	46.75
CDY18383	Canola	nucleus, plastid	41.14	46.36
CDY14459	Canola	nucleus, plastid	41.7	46.12
KXG33637	Sorghum	nucleus	47.23	46.04
KRH00362	Soybean	nucleus	45.76	45.84
KRH40825	Soybean	nucleus	45.76	45.67
Os01t0826400-01	Rice	extracellular	46.68	45.59
TraesCS1A01G298600.1	Wheat	nucleus, plastid	42.44	45.54
Zm00001d043025_P001	Maize	nucleus	46.49	45.41
TraesCS1D01G292700.1	Wheat	nucleus, plastid	42.44	45.36
TraesCS1B01G308200.1	Wheat	nucleus, plastid	42.44	45.19
HORVU1Hr1G070250.2	Barley	nucleus, plastid	42.44	44.92
KRH76058	Soybean	nucleus	41.88	44.77
TraesCS3B01G379200.1	Wheat	nucleus	45.76	44.36
TraesCS3D01G341100.1	Wheat	nucleus	45.76	44.21
TraesCS3A01G347500.1	Wheat	nucleus	45.76	44.13
KRH65526	Soybean	nucleus	41.14	43.98
AT2G38470.1	Thale cress	nucleus, plastid	41.7	43.55
CDY48650	Canola	nucleus, plastid	34.87	42.66
Zm00001d038451_P001	Maize	nucleus	43.17	42.01
Os05t0474800-01	Rice	nucleus	44.1	41.78
Zm00001d012482_P001	Maize	nucleus	45.02	41.15
HORVU3Hr1G088200.4	Barley	nucleus, plastid	44.83	40.57
KRH70820	Soybean	nucleus, plastid	26.94	40.11
KRH34225	Soybean	nucleus	14.21	40.1
KRH55277	Soybean	nucleus	15.31	39.15
GSMUA_Achr8P01790_001	Banana	nucleus	40.77	38.77
OQU78174	Sorghum	nucleus	43.91	36.67
KRH49522	Soybean	extracellular, plasma membrane	16.24	34.92
KRG89512	Soybean	nucleus	28.04	34.62
KRH74950	Soybean	nucleus	28.97	34.51
KRH67621	Soybean	nucleus	28.23	34.15
KRG98564	Soybean	nucleus	36.16	33.97
KRH46302	Soybean	nucleus	36.16	33.97
KRH14276	Soybean	nucleus	36.53	33.85
KRH50544	Soybean	nucleus	27.49	33.71
KRH73864	Soybean	nucleus	35.98	33.16
KRG95903	Soybean	nucleus	28.6	32.91
KRH44949	Soybean	nucleus	30.63	31.74
KRH01236	Soybean	nucleus	30.26	31.54
KRH62550	Soybean	nucleus	37.64	26.81
KRH56379	Soybean	nucleus	36.72	25.64
KRH40304	Soybean	nucleus	34.69	25.61
KRH00919	Soybean	nucleus	35.06	25.54
KRH03056	Soybean	nucleus	5.54	25.42
KRH34226	Soybean	nucleus	14.94	24.11
KRH74020	Soybean	nucleus	22.32	23.87
KRH14103	Soybean	nucleus	22.32	23.82
KRH26105	Soybean	nucleus	19.93	23.13
KRH54934	Soybean	nucleus	18.82	21.7
KRH03057	Soybean	nucleus	14.58	20.47
KRH72303	Soybean	nucleus	19.74	20.07
KRH34224	Soybean	nucleus	12.92	19.07

Protein Annotations

EntrezGene:100127397	MapMan:15.5.22	Gene3D:2.20.25.80	MapMan:26.8.3.3.1	EMBL:ACUP02010851	EnsemblPlantsGene:GLYMA_18G056600
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657
InterPro:IPR036576	UniProt:K7MQ56	EnsemblPlants:KRG98195	ProteinID:KRG98195	ProteinID:KRG98195.1	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000233EAF7
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:4952759..4956347

Molecular Weight (calculated)

59863.7 Da

IEP (calculated)

7.342

GRAVY (calculated)

-0.889

Length

542 amino acids

Sequence
(BLAST)

001: MITSFSDLLS SPTTDHNLGV SERPHLKSSS SDQAGSSGGV PKFKSTPPPS LPLSHHLPPI FSPSSYFNFN IPHGLSLAEL LDSPVLLNSS NVLPSPTTGS
101: FAGQGFNWKS SYGESQQHVK EEDKSFSSFS FQTQTHPPLP SSNGFQSSTG VVQTGWSFPE IAKQDGFASR MSMSMVKTET TSAMQSFNSE NNNHRNGFQS
201: DHKNYQPPQV QTLSRRSDDG YNWRKYGQKQ VKGSENPRSY YKCTYPNCPT KKKVERSLDG QITEIVYKGT HNHPKPQAAK RNSLSASSLA IPHSNHGGIN
301: ELPHQMDSVA TPENSSISME DDDFDHTKSG GDEFDNDEPD AKRWRIEGEN EGMPAIESRT VREPRVVFQT TSDIDILDDG YRWRKYGQKV VKGNPNPRSY
401: YKCTFPGCPV RKHVERASQD LRAVITTYEG KHNHDVPAAR GSGNNSMNRS LPITNTTNNT SAATSLYTNN NSLQSLRPPA APERTSSHFN PNMQQSSSGS
501: FGFSGFGNPL MGSYTNQQSD NVFITRAKEE PGDDSFLDSF LC

Best Arabidopsis Sequence Match ( AT2G30250.1 )
(BLAST)

001: MSSTSFTDLL GSSGVDCYED DEDLRVSGSS FGGYYPERTG SGLPKFKTAQ PPPLPISQSS HNFTFSDYLD SPLLLSSSHS LISPTTGTFP LQGFNGTTNN
101: HSDFPWQLQS QPSNASSALQ ETYGVQDHEK KQEMIPNEIA TQNNNQSFGT ERQIKIPAYM VSRNSNDGYG WRKYGQKQVK KSENPRSYFK CTYPDCVSKK
201: IVETASDGQI TEIIYKGGHN HPKPEFTKRP SQSSLPSSVN GRRLFNPASV VSEPHDQSEN SSISFDYSDL EQKSFKSEYG EIDEEEEQPE MKRMKREGED
301: EGMSIEVSKG VKEPRVVVQT ISDIDVLIDG FRWRKYGQKV VKGNTNPRSY YKCTFQGCGV KKQVERSAAD ERAVLTTYEG RHNHDIPTAL RRS

Arabidopsis Description

WRKY25Probable WRKY transcription factor 25 [Source:UniProtKB/Swiss-Prot;Acc:O22921]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.