CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98195
KRH00362
KRH00834
KRH02666
KRH04611	nucleus
KRH06592
KRH10893	nucleus
KRH12458
KRH16614
KRH16616
KRH16774
KRH17125
KRH18819
KRH19241
KRH20439	nucleus
KRH21417	nucleus
KRH22072	nucleus
KRH26132	nucleus
KRH27258	nucleus
KRH30155
KRH33212
KRH37444
KRH37938	nucleus
KRH38333	nucleus
KRH40392
KRH40825
KRH43402
KRH45443
KRH45444
KRH45449
KRH48074
KRH50064	nucleus
KRH53024
KRH53173
KRH53873
KRH55250	nucleus
KRH59551
KRH62312
KRH64076
KRH64744
KRH65526
KRH72031
KRH72387
KRH72765
KRH74422
KRH75619
KRH76058

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G01370.1	KRH04611	AT1G28280.1	24750137
AT4G01370.1	KRH10893	AT1G28280.1	24750137
AT4G01370.1	KRH20439	AT1G28280.1	24750137
AT4G01370.1	KRH21417	AT1G28280.1	24750137
AT4G01370.1	KRH37938	AT1G28280.1	24750137
AT4G01370.1	KRH50064	AT1G28280.1	24750137
AT4G01370.1	KRH16774	AT1G78310.1	24750137
AT4G01370.1	KRH53024	AT1G78310.1	24750137
AT4G01370.1	KRH62312	AT1G78310.1	24750137
AT4G01370.1	KRH72387	AT1G78310.1	24750137
AT4G01370.1	KRH00362	AT2G30250.1	15990873
AT4G01370.1	KRH40825	AT2G30250.1	15990873
AT4G01370.1	KRH65526	AT2G30250.1	15990873
AT4G01370.1	KRH76058	AT2G30250.1	15990873
AT4G01370.1	KRH45443	AT2G35230.1	24750137
AT4G01370.1	KRH45444	AT2G35230.1	24750137
AT4G01370.1	KRH45449	AT2G35230.1	24750137
AT4G01370.1	KRH74422	AT2G35230.1	24750137
AT4G01370.1	KRH75619	AT2G35230.1	24750137
AT4G01370.1	KRG98195	AT2G38470.1	18650934
AT4G01370.1	KRH17125	AT2G38470.1	18650934
AT4G01370.1	KRH30155	AT2G38470.1	18650934
AT4G01370.1	KRH72765	AT2G38470.1	18650934
AT4G01370.1	KRH43402	AT3G18690.1	15990873
AT4G01370.1	KRH53873	AT3G18690.1	15990873
AT4G01370.1	KRH59551	AT3G18690.1	15990873
AT4G01370.1	KRH64076	AT3G18690.1	15990873
AT4G01370.1	KRH43402	AT3G18690.1	21203436
AT4G01370.1	KRH53873	AT3G18690.1	21203436
AT4G01370.1	KRH59551	AT3G18690.1	21203436
AT4G01370.1	KRH64076	AT3G18690.1	21203436
AT4G01370.1	KRH43402	AT3G18690.1	23115249
AT4G01370.1	KRH53873	AT3G18690.1	23115249
AT4G01370.1	KRH59551	AT3G18690.1	23115249
AT4G01370.1	KRH64076	AT3G18690.1	23115249
AT4G01370.1	KRH43402	AT3G18690.1	24750137
AT4G01370.1	KRH53873	AT3G18690.1	24750137
AT4G01370.1	KRH59551	AT3G18690.1	24750137
AT4G01370.1	KRH64076	AT3G18690.1	24750137
AT4G01370.1	KRH00834	AT4G01370.1	19513235
AT4G01370.1	KRH06592	AT4G01370.1	19513235
AT4G01370.1	KRH40392	AT4G01370.1	19513235
AT4G01370.1	KRH48074	AT4G01370.1	19513235
AT4G01370.1	KRH16614	AT4G08480.1	22643122
AT4G01370.1	KRH16616	AT4G08480.1	22643122
AT4G01370.1	KRH18819	AT4G08480.1	22643122
AT4G01370.1	KRH53173	AT4G08480.1	22643122
AT4G01370.1	KRH64744	AT4G08480.1	22643122
AT4G01370.1	KRH02666	AT4G29810.2	23115249
AT4G01370.1	KRH12458	AT4G29810.2	23115249
AT4G01370.1	KRH19241	AT4G29810.2	23115249
AT4G01370.1	KRH37444	AT4G29810.2	23115249
AT4G01370.1	KRH22072	AT5G53830.1	24750137
AT4G01370.1	KRH26132	AT5G53830.1	24750137
AT4G01370.1	KRH27258	AT5G53830.1	24750137
AT4G01370.1	KRH38333	AT5G53830.1	24750137
AT4G01370.1	KRH55250	AT5G53830.1	24750137
AT4G01370.1	KRH33212	AT5G56580.1	19513235
AT4G01370.1	KRH72031	AT5G56580.1	19513235

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06592	Soybean	cytosol	98.66	98.66
KRH00834	Soybean	cytosol	90.35	90.35
KRH40392	Soybean	cytosol	89.28	89.28
VIT_15s0046g02010.t01	Wine grape	cytosol	88.74	88.27
Solyc01g094960.2.1	Tomato	cytosol, nucleus	84.72	84.72
PGSC0003DMT400000192	Potato	cytosol	84.72	84.72
AT4G01370.1	Thale cress	cytosol	84.99	84.31
Bra000955.1-P	Field mustard	cytosol	84.18	84.18
CDX74352	Canola	cytosol	83.91	83.91
CDX91889	Canola	cytosol	83.91	83.91
AT1G01560.2	Thale cress	cytosol	82.84	83.74
Os10t0533600-01	Rice	plasma membrane	82.84	82.18
KRH77584	Soybean	cytosol	82.04	81.6
Zm00001d047349_P001	Maize	extracellular	80.7	80.91
EER94589	Sorghum	cytosol	81.77	80.9
TraesCS1D01G192200.1	Wheat	cytosol	80.7	80.05
TraesCS1B01G192600.3	Wheat	cytosol	80.7	80.05
KRH27898	Soybean	cytosol	59.79	79.93
TraesCS1A01G184500.1	Wheat	cytosol	80.7	79.84
HORVU1Hr1G049500.2	Barley	cytosol	80.43	79.58
KRH41233	Soybean	cytosol	80.7	78.39
KRH59962	Soybean	cytosol	80.16	77.66
KRH24967	Soybean	cytosol	76.41	75.8
KRG88717	Soybean	cytosol	75.6	75.6
KRH71277	Soybean	nucleus	68.63	65.47
KRH24954	Soybean	nucleus	64.08	64.42
KRG89065	Soybean	nucleus	63.81	64.15
KRH50176	Soybean	cytosol, nucleus	68.63	59.12
KRH61130	Soybean	cytosol	55.23	55.53
KRH58939	Soybean	cytosol	54.42	55.16
KRH51805	Soybean	cytosol	54.16	54.45
KRH42844	Soybean	cytosol	54.69	51.13
KRH50997	Soybean	cytosol	27.35	49.28
KRH21856	Soybean	cytosol	44.24	35.87
KRH39091	Soybean	cytosol	45.04	32.75
KRH02140	Soybean	cytosol	44.5	31.44
KRH11360	Soybean	cytosol	45.84	30.48
KRH20928	Soybean	cytosol	45.58	30.2
KRH41801	Soybean	cytosol, mitochondrion	46.11	29.2
KRH60506	Soybean	cytosol	46.38	29.12
KRH48627	Soybean	cytosol	45.31	28.45
KRG98916	Soybean	cytosol	46.38	28.18
KRH14477	Soybean	cytosol	46.11	28.15
KRH46057	Soybean	cytosol	46.11	27.97
KRH13458	Soybean	cytosol	44.5	27.35
KRH73659	Soybean	cytosol	45.84	27.19
KRH50993	Soybean	cytosol	12.87	13.19

Protein Annotations

KEGG:04150+2.7.11.24	Gene3D:1.10.510.10	MapMan:13.4.4.1.4	MapMan:18.4.3.6	Gene3D:3.30.200.20	EMBL:ACUP02004202
EnsemblPlantsGene:GLYMA_07G066800	GO:GO:0000165	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0004707	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010468
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	UniProt:I1KI59	InterPro:IPR000719
EnsemblPlants:KRH48074	ProteinID:KRH48074	ProteinID:KRH48074.1	InterPro:Kinase-like_dom_sf	InterPro:MAP_kinase_CS	PFAM:PF00069
PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	ScanProsite:PS01351	PFscan:PS50011	PANTHER:PTHR24055
PANTHER:PTHR24055:SF227	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI0002338054	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:6018022..6023893

Molecular Weight (calculated)

42878.4 Da

IEP (calculated)

6.586

GRAVY (calculated)

-0.342

Length

373 amino acids

Sequence
(BLAST)

001: MSVVESGEHN NIRGVPTHGG RYVQYNIYGN LFEVSRKYVP PIRPVGRGAY GIVCAAVNAE TGEEVAIKKI GNAFDNRIDA KRTLREIKLL RHMDHANIMS
101: IKDIIRPPQK ENFNDVYLVS ELMDTDLHQI IRSNQQLTDD HCRYFLYQLL RGLKYVHSAN VLHRDLKPSN LLLNANCDLK IADFGLARTT SETDFMTEYV
201: VTRWYRAPEL LLNCSEYTAA IDIWSVGCIL GEIITRQPLF PGKDYVHQLR LITELIGSPN DASLGFLRSD NARRYVKQLP QYPKQNFSAR FPDMSPGAVD
301: LLEKMLIFDP NRRITVDEAL SHPYMAPLHD INEEPVCTRP FSFDFEQPSF TEEDIKELIW RESVKFNPVP PVY

Best Arabidopsis Sequence Match ( AT4G01370.1 )
(BLAST)

001: MSAESCFGSS GDQSSSKGVA THGGSYVQYN VYGNLFEVSR KYVPPLRPIG RGAYGIVCAA TNSETGEEVA IKKIGNAFDN IIDAKRTLRE IKLLKHMDHE
101: NVIAVKDIIK PPQRENFNDV YIVYELMDTD LHQIIRSNQP LTDDHCRFFL YQLLRGLKYV HSANVLHRDL KPSNLLLNAN CDLKLGDFGL ARTKSETDFM
201: TEYVVTRWYR APELLLNCSE YTAAIDIWSV GCILGETMTR EPLFPGKDYV HQLRLITELI GSPDDSSLGF LRSDNARRYV RQLPQYPRQN FAARFPNMSA
301: GAVDLLEKML VFDPSRRITV DEALCHPYLA PLHDINEEPV CVRPFNFDFE QPTLTEENIK ELIYRETVKF NPQDSV

Arabidopsis Description

MPK4Mitogen-activated protein kinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q39024]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.