CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0527g00020.t01	Wine grape	cytosol, nucleus, plastid	36.3	62.2
KRH10893	Soybean	nucleus	40.21	56.78
KRH04611	Soybean	plastid	25.27	54.62
Bra030082.1-P	Field mustard	nucleus, plastid	46.26	53.28
CDY15683	Canola	nucleus, plastid	46.26	53.28
CDY35728	Canola	nucleus, plastid	44.13	53.22
Bra010885.1-P	Field mustard	nucleus, plastid	30.61	53.09
CDX94599	Canola	nucleus, plastid	46.26	52.42
KRH50064	Soybean	nucleus, plastid	57.3	51.94
KRH37938	Soybean	mitochondrion	24.2	51.91
AT1G28280.1	Thale cress	nucleus, plastid	44.84	51.01
CDX90141	Canola	nucleus, plastid	40.57	50.22
PGSC0003DMT400076377	Potato	nucleus	44.84	48.09
CDY37691	Canola	plastid	33.81	47.74
Solyc02g078030.1.1	Tomato	nucleus, plastid	44.48	47.53
KRH22072	Soybean	nucleus, plastid	41.64	46.99
KRH38333	Soybean	plastid	31.67	44.5
KRH27258	Soybean	nucleus, plastid	38.79	44.31
KRH55250	Soybean	nucleus, plastid	37.72	43.44
GSMUA_Achr4P10440_001	Banana	nucleus	32.03	42.65
KRH21417	Soybean	nucleus	39.15	42.31
Os01t0201250-00	Rice	plastid	31.67	41.98
GSMUA_AchrUn_...	Banana	nucleus	36.3	41.63
KRH26132	Soybean	nucleus, plastid	36.65	41.53
Zm00001d038810_P001	Maize	plastid	32.03	41.47
TraesCS1D01G340900.1	Wheat	plastid	35.23	40.91
Zm00001d010759_P001	Maize	plastid	32.03	40.91
TraesCS3D01G272900.1	Wheat	nucleus, plastid	34.52	40.76
AT2G33780.1	Thale cress	nucleus	29.54	40.69
TraesCS1B01G351200.1	Wheat	plastid	34.16	40.51
TraesCS3A01G313700.1	Wheat	plastid	30.25	40.48
TraesCS1A01G338700.1	Wheat	plastid	34.52	40.42
TraesCS3A01G273600.1	Wheat	nucleus, plastid	34.16	40.34
EES00109	Sorghum	cytosol, nucleus, plasma membrane, plastid	31.32	40.18
Zm00001d008878_P001	Maize	cytosol	30.25	40.09
Zm00001d039428_P001	Maize	plastid	30.61	40.0
TraesCS3B01G307300.1	Wheat	nucleus, plastid	32.74	39.83
Os01t0747800-01	Rice	nucleus	32.74	39.83
HORVU3Hr1G026840.1	Barley	plastid	29.89	39.62
TraesCS3B01G158200.1	Wheat	plastid	29.54	39.52
TraesCS3D01G140600.1	Wheat	plastid	29.54	39.52
GSMUA_Achr7P13760_001	Banana	nucleus	34.88	39.52
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	33.45	39.5
GSMUA_Achr8P27670_001	Banana	plastid	15.3	39.45
GSMUA_Achr4P02580_001	Banana	nucleus	36.3	39.38
EES03601	Sorghum	nucleus, plastid	33.1	39.24
Zm00001d043450_P001	Maize	nucleus, plastid	34.88	39.04
GSMUA_AchrUn_...	Banana	nucleus	34.88	38.74
Os05t0519000-00	Rice	plastid	35.94	37.41
EES18519	Sorghum	plastid	33.1	36.76
Bra005472.1-P	Field mustard	mitochondrion, plastid	23.84	36.41
KRH47420	Soybean	plastid	24.91	36.27
GSMUA_Achr9P05800_001	Banana	nucleus	32.38	35.55
HORVU1Hr1G076390.1	Barley	plastid	34.16	35.04
HORVU3Hr1G071320.1	Barley	plastid	34.88	33.22
CDY17201	Canola	plastid	23.49	33.0
CDY27942	Canola	nucleus	22.78	32.0
KRH44484	Soybean	plastid	22.06	31.96
KRH59700	Soybean	nucleus	19.93	30.11
KRH41023	Soybean	nucleus	18.51	29.89

Protein Annotations

EMBL:ACUP02008264	EnsemblPlants:KRH20439	EnsemblPlantsGene:GLYMA_13G178500	EntrezGene:100776411	InterPro:VQ	PANTHER:PTHR33402
PANTHER:PTHR33402:SF9	PFAM:PF05678	ProteinID:KRH20439	ProteinID:KRH20439.1	SEG:seg	UniParc:UPI000233B7E5
UniProt:I1M097	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:29214837..29216116

Molecular Weight (calculated)

30475.6 Da

IEP (calculated)

10.429

GRAVY (calculated)

-0.656

Length

281 amino acids

Sequence
(BLAST)

001: MDSPRYHQEH HHYHHHHRVN LLPSPRHSLS SSNSSTSSTS SNNNGLHHSQ LLPPLTPTTV SVPPSPTSPY PPKSVTRSES GNPYPTTFVQ ADTNSFKQVV
101: QMLTGSTQTA KQASASASPK PNSEPSKPHS HIPPIRKQTG FKLLERRNNS LKNLNINPLI GTSGFIRGSD NNIKNVVVSS FSPSSRKPEV LSPSILDFPA
201: LVLSPVTPLI PDPFNRSRFL NENGTVLMDA IEAAAEEKAI KEKGFFLHPS PASTPRDEKP RLLPLFPTDA SPGSASSNSS S

Best Arabidopsis Sequence Match ( AT1G28280.1 )
(BLAST)

001: MENSPRYREA TNLIPSPRCH NSNNSCGMSS SSESNKPPTT PTRHVTTRSE SGNPYPTTFV QADTSSFKQV VQMLTGSAER PKHGSSLKPN PTHHQPDPRS
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSG SSSASTS

Arabidopsis Description

VQ4VQ motif-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q5M750]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.