Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P27670_001 | Banana | plastid | 27.03 | 64.22 |
| GSMUA_Achr9P05800_001 | Banana | nucleus | 57.92 | 58.59 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 53.67 | 58.4 |
| GSMUA_Achr7P13760_001 | Banana | nucleus | 53.67 | 56.05 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.97 | 53.88 |
| VIT_19s0014g02490.t01 | Wine grape | nucleus, plastid | 43.63 | 53.81 |
| GSMUA_AchrUn_... | Banana | nucleus | 51.74 | 52.96 |
| PGSC0003DMT400097260 | Potato | nucleus, plastid | 46.33 | 52.17 |
| Solyc07g063070.1.1 | Tomato | nucleus, plastid | 46.33 | 51.5 |
| GSMUA_Achr4P10440_001 | Banana | nucleus | 41.31 | 50.71 |
| KRH10893 | Soybean | nucleus | 37.45 | 48.74 |
| KRH38333 | Soybean | plastid | 37.45 | 48.5 |
| KRH27258 | Soybean | nucleus, plastid | 45.95 | 48.37 |
| Bra010885.1-P | Field mustard | nucleus, plastid | 28.96 | 46.3 |
| CDX90141 | Canola | nucleus, plastid | 40.15 | 45.81 |
| VIT_00s0527g00020.t01 | Wine grape | cytosol, nucleus, plastid | 28.57 | 45.12 |
| CDY35728 | Canola | nucleus, plastid | 40.54 | 45.06 |
| KRH26132 | Soybean | nucleus, plastid | 42.86 | 44.76 |
| CDY37691 | Canola | plastid | 33.98 | 44.22 |
| KRH22072 | Soybean | nucleus, plastid | 42.47 | 44.18 |
| KRH55250 | Soybean | nucleus, plastid | 41.31 | 43.85 |
| CDX96246 | Canola | nucleus | 35.14 | 42.92 |
| AT1G28280.1 | Thale cress | nucleus, plastid | 40.93 | 42.91 |
| CDX97648 | Canola | plastid | 36.68 | 42.79 |
| Bra027262.1-P | Field mustard | plastid | 37.07 | 42.67 |
| Bra021096.1-P | Field mustard | nucleus, plastid | 35.52 | 42.59 |
| CDY15683 | Canola | nucleus, plastid | 39.77 | 42.21 |
| Bra030082.1-P | Field mustard | nucleus, plastid | 39.77 | 42.21 |
| Solyc02g078030.1.1 | Tomato | nucleus, plastid | 42.86 | 42.21 |
| Bra003032.1-P | Field mustard | nucleus | 36.68 | 41.85 |
| CDY20126 | Canola | nucleus, plastid | 34.75 | 41.67 |
| PGSC0003DMT400076377 | Potato | nucleus | 42.08 | 41.6 |
| AT3G15300.1 | Thale cress | nucleus, plastid | 35.14 | 41.55 |
| CDY65903 | Canola | nucleus | 33.98 | 41.31 |
| CDX94599 | Canola | nucleus, plastid | 39.38 | 41.13 |
| CDY32307 | Canola | nucleus | 35.14 | 40.99 |
| CDX98545 | Canola | plastid | 30.5 | 40.31 |
| Bra022675.1-P | Field mustard | nucleus | 37.45 | 40.25 |
| CDX96247 | Canola | nucleus | 37.07 | 39.67 |
| CDY14349 | Canola | nucleus | 36.68 | 39.09 |
| AT5G53830.1 | Thale cress | nucleus | 35.91 | 38.27 |
| AT2G33780.1 | Thale cress | nucleus | 29.73 | 37.75 |
| KRH21417 | Soybean | nucleus | 37.84 | 37.69 |
| KRH04611 | Soybean | plastid | 18.53 | 36.92 |
| KRH37938 | Soybean | mitochondrion | 18.53 | 36.64 |
| KRH20439 | Soybean | nucleus, plastid | 39.38 | 36.3 |
| Bra005472.1-P | Field mustard | mitochondrion, plastid | 24.32 | 34.24 |
| CDY27942 | Canola | nucleus | 25.1 | 32.5 |
| KRH50064 | Soybean | nucleus, plastid | 38.61 | 32.26 |
| CDY17201 | Canola | plastid | 24.71 | 32.0 |
| GSMUA_Achr3P19850_001 | Banana | nucleus | 22.01 | 27.67 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P02580_001 | EnsemblPlants:GSMUA_Achr4T02580_001 | EnsemblPlantsGene:GSMUA_Achr4G02580_001 | InterPro:VQ | PANTHER:PTHR33402 | PANTHER:PTHR33402:SF9 |
| PFAM:PF05678 | SEG:seg | UniParc:UPI000295539F | UniProt:M0SKH5 | MapMan:35.1 | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G02580_001]
Coordinates
chr4:+:2211540..2212585
Molecular Weight (calculated)
27042.1 Da
IEP (calculated)
10.552
GRAVY (calculated)
-0.430
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MENHHLHLQD REIQSAHPNS PHSTTSGSCI SNNNGATAAA ATAGLAPPPP PLTPKPLSRS TDSNPYPTTF IQADTSSFKQ VVQMLTGSAE TTAKHVASAA
101: APAKNPLSPP TVAKSATAPK KPAFKLYERR GSLKNLKMIG PLIPTLLGSN PSSPVGNGKP FSPSRNQMPE ILSPSVLDFP SLALSPVTPL IPDPFNRPPH
201: PNPAAGMSAE DRAIAEKGFY LHPSPRTTPR DAQPPRLLPL FPVTSPKMSS ASAAAGSST
101: APAKNPLSPP TVAKSATAPK KPAFKLYERR GSLKNLKMIG PLIPTLLGSN PSSPVGNGKP FSPSRNQMPE ILSPSVLDFP SLALSPVTPL IPDPFNRPPH
201: PNPAAGMSAE DRAIAEKGFY LHPSPRTTPR DAQPPRLLPL FPVTSPKMSS ASAAAGSST
001: MENSPRYREA TNLIPSPRCH NSNNSCGMSS SSESNKPPTT PTRHVTTRSE SGNPYPTTFV QADTSSFKQV VQMLTGSAER PKHGSSLKPN PTHHQPDPRS
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSV NKR
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSV NKR
Arabidopsis Description
VQ4VQ motif-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q5M750]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.