CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021096.1-P	Field mustard	nucleus, plastid	97.22	97.22
CDY32307	Canola	nucleus	88.89	86.49
CDX97648	Canola	plastid	82.87	80.63
AT3G15300.1	Thale cress	nucleus, plastid	75.0	73.97
CDX98545	Canola	plastid	62.5	68.88
VIT_19s0014g02490.t01	Wine grape	nucleus, plastid	50.46	51.9
KRH27258	Soybean	nucleus, plastid	55.56	48.78
KRH55250	Soybean	nucleus, plastid	53.7	47.54
KRH38333	Soybean	plastid	43.98	47.5
KRH22072	Soybean	nucleus, plastid	54.63	47.39
Solyc07g063070.1.1	Tomato	nucleus, plastid	50.93	47.21
PGSC0003DMT400097260	Potato	nucleus, plastid	50.0	46.96
KRH26132	Soybean	nucleus, plastid	53.7	46.77
GSMUA_Achr8P27670_001	Banana	plastid	22.69	44.95
CDX90141	Canola	nucleus, plastid	46.76	44.49
CDX96246	Canola	nucleus	42.13	42.92
CDY14349	Canola	nucleus	48.15	42.8
CDY37691	Canola	plastid	39.35	42.71
CDY35728	Canola	nucleus, plastid	45.37	42.06
CDX96247	Canola	nucleus	46.76	41.74
EES03601	Sorghum	nucleus, plastid	45.37	41.35
CDY65903	Canola	nucleus	40.74	41.31
CDY15683	Canola	nucleus, plastid	45.83	40.57
Os01t0747800-01	Rice	nucleus	43.06	40.26
TraesCS3B01G307300.1	Wheat	nucleus, plastid	42.13	39.39
GSMUA_Achr4P10440_001	Banana	nucleus	38.43	39.34
CDX94599	Canola	nucleus, plastid	44.91	39.11
GSMUA_AchrUn_...	Banana	nucleus	43.98	38.78
HORVU3Hr1G026840.1	Barley	plastid	37.96	38.68
TraesCS3A01G313700.1	Wheat	plastid	37.04	38.1
TraesCS3B01G158200.1	Wheat	plastid	37.04	38.1
TraesCS3D01G140600.1	Wheat	plastid	37.04	38.1
Os01t0201250-00	Rice	plastid	37.04	37.74
Zm00001d010759_P001	Maize	plastid	38.43	37.73
TraesCS3A01G273600.1	Wheat	nucleus, plastid	41.2	37.4
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	41.2	37.4
Zm00001d038810_P001	Maize	plastid	37.5	37.33
GSMUA_Achr7P13760_001	Banana	nucleus	42.59	37.1
TraesCS3D01G272900.1	Wheat	nucleus, plastid	40.74	36.97
Zm00001d008878_P001	Maize	cytosol	36.11	36.79
GSMUA_AchrUn_...	Banana	nucleus	43.06	36.76
CDX69949	Canola	plastid	25.46	36.67
TraesCS1A01G338700.1	Wheat	plastid	40.74	36.67
EES00109	Sorghum	cytosol, nucleus, plasma membrane, plastid	37.04	36.53
TraesCS1D01G340900.1	Wheat	plastid	40.74	36.36
TraesCS1B01G351200.1	Wheat	plastid	39.81	36.29
Zm00001d043450_P001	Maize	nucleus, plastid	41.2	35.46
Zm00001d039428_P001	Maize	plastid	35.19	35.35
GSMUA_Achr4P02580_001	Banana	nucleus	41.67	34.75
GSMUA_Achr9P05800_001	Banana	nucleus	40.74	34.38
CDX67947	Canola	nucleus	25.46	33.54
CDY17201	Canola	plastid	31.02	33.5
Os05t0519000-00	Rice	plastid	41.2	32.96
EES18519	Sorghum	plastid	38.43	32.81
CDY27942	Canola	nucleus	30.09	32.5
CDY40742	Canola	nucleus	20.83	32.14
CDY39978	Canola	nucleus	24.07	31.14
CDX87310	Canola	nucleus	23.61	30.54
HORVU1Hr1G076390.1	Barley	plastid	38.43	30.29
CDX79386	Canola	plastid	24.07	30.23
CDY37597	Canola	nucleus	22.22	29.27
HORVU3Hr1G071320.1	Barley	plastid	38.89	28.47
CDY38669	Canola	nucleus	25.46	28.35
CDX81107	Canola	nucleus	25.46	25.82
CDY62120	Canola	mitochondrion, nucleus	22.69	24.75
CDY60233	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	26.85	24.27

Protein Annotations

EnsemblPlants:CDY20126	EnsemblPlantsGene:GSBRNA2T00009984001	InterPro:VQ	PANTHER:PTHR33402	PANTHER:PTHR33402:SF6	PFAM:PF05678
ProteinID:CDY20126	ProteinID:CDY20126.1	SEG:seg	UniParc:UPI0004EE79A0	UniProt:A0A078G443	MapMan:35.1

Description

BnaA01g28760DBnaA01g28760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G443]

Coordinates

chrLK032103:+:292540..293323

Molecular Weight (calculated)

23594.6 Da

IEP (calculated)

9.960

GRAVY (calculated)

-0.823

Length

216 amino acids

Sequence
(BLAST)

001: MEIATKQGDS RTQSSTSCSS ASSSLHQHII TRSDHYPTTF VQADTSSFKQ VVQMLTGSSS PRSPDSPRPP TNPSGKGNFV IPPIKTTQPK KHSGNKLYER
101: RSNNNSLKNS LMINTLMIGG GNGAGSPRFS PRNQEILSPS CLDFPKLALN SPVTPLKHGG DGNDSDTFDR MSPLSEEERA ISEKRYYLHR SPRESEPQLL
201: PLFPVTSPRV SASPEN

Best Arabidopsis Sequence Match ( AT3G15300.1 )
(BLAST)

001: MEISTNPPSS SSSSVSSSII NGSLHHHIIT RSDHYPTTFV QADSSSFKQV VQMLTGSSSP RSPDSPRPPT TPSGKGNFVI PPIKTAQPKK HSGNKLYERR
101: SHGGFNNNLK NSLMINTLMI GGGGAGSPRF SPRNQEILSP SCLDFPKLAL NSPVTPLKQG TNGNEGDPFD KMSPLSEEER GIADKGYYLH RSPISTPRDS
201: EPQLLPLFPV TSPRLSPEM

Arabidopsis Description

VQ19VQ motif-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDZ1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.