Factsheet for Bra021096.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20126	Canola	nucleus, plastid	97.22	97.22
CDY32307	Canola	nucleus	88.89	86.49
Bra027262.1-P	Field mustard	plastid	85.19	81.78
AT3G15300.1	Thale cress	nucleus, plastid	75.93	74.89
VIT_19s0014g02490.t01	Wine grape	nucleus, plastid	50.93	52.38
KRH27258	Soybean	nucleus, plastid	57.41	50.41
Bra010885.1-P	Field mustard	nucleus, plastid	37.5	50.0
KRH22072	Soybean	nucleus, plastid	56.48	49.0
KRH38333	Soybean	plastid	44.44	48.0
KRH55250	Soybean	nucleus, plastid	54.17	47.95
GSMUA_Achr8P27670_001	Banana	plastid	24.07	47.71
Solyc07g063070.1.1	Tomato	nucleus, plastid	51.39	47.64
PGSC0003DMT400097260	Potato	nucleus, plastid	50.46	47.39
KRH26132	Soybean	nucleus, plastid	54.17	47.18
Bra003032.1-P	Field mustard	nucleus	48.61	46.26
Bra022675.1-P	Field mustard	nucleus	48.15	43.15
EES03601	Sorghum	nucleus, plastid	45.37	41.35
Bra030082.1-P	Field mustard	nucleus, plastid	46.3	40.98
Os01t0747800-01	Rice	nucleus	43.52	40.69
TraesCS3B01G307300.1	Wheat	nucleus, plastid	42.13	39.39
GSMUA_Achr4P10440_001	Banana	nucleus	38.43	39.34
GSMUA_AchrUn_...	Banana	nucleus	44.44	39.18
HORVU3Hr1G026840.1	Barley	plastid	37.96	38.68
Zm00001d010759_P001	Maize	plastid	39.35	38.64
TraesCS3D01G140600.1	Wheat	plastid	37.5	38.57
TraesCS3B01G158200.1	Wheat	plastid	37.5	38.57
TraesCS3A01G313700.1	Wheat	plastid	37.5	38.57
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	42.13	38.24
Os01t0201250-00	Rice	plastid	37.5	38.21
TraesCS1A01G338700.1	Wheat	plastid	42.13	37.92
GSMUA_Achr7P13760_001	Banana	nucleus	43.52	37.9
TraesCS3A01G273600.1	Wheat	nucleus, plastid	41.67	37.82
Zm00001d038810_P001	Maize	plastid	37.96	37.79
Zm00001d008878_P001	Maize	cytosol	37.04	37.74
TraesCS1B01G351200.1	Wheat	plastid	41.2	37.55
EES00109	Sorghum	cytosol, nucleus, plasma membrane, plastid	37.96	37.44
TraesCS3D01G272900.1	Wheat	nucleus, plastid	41.2	37.4
GSMUA_AchrUn_...	Banana	nucleus	43.52	37.15
Bra005472.1-P	Field mustard	mitochondrion, plastid	31.48	36.96
TraesCS1D01G340900.1	Wheat	plastid	41.2	36.78
Zm00001d043450_P001	Maize	nucleus, plastid	41.67	35.86
Zm00001d039428_P001	Maize	plastid	35.65	35.81
GSMUA_Achr4P02580_001	Banana	nucleus	42.59	35.52
GSMUA_Achr9P05800_001	Banana	nucleus	41.67	35.16
Bra009343.1-P	Field mustard	cytosol, plastid	16.2	34.31
Os05t0519000-00	Rice	plastid	42.13	33.7
EES18519	Sorghum	plastid	38.89	33.2
HORVU1Hr1G076390.1	Barley	plastid	39.81	31.39
Bra003566.1-P	Field mustard	nucleus	25.0	31.21
Bra035182.1-P	Field mustard	nucleus	24.07	31.14
Bra005995.1-P	Field mustard	cytosol, nucleus, plastid	25.0	31.03
Bra008473.1-P	Field mustard	nucleus	22.69	29.88
HORVU3Hr1G071320.1	Barley	plastid	38.89	28.47

Protein Annotations

EnsemblPlants:Bra021096.1	EnsemblPlants:Bra021096.1-P	EnsemblPlantsGene:Bra021096	InterPro:VQ	PANTHER:PTHR33402	PANTHER:PTHR33402:SF6
PFAM:PF05678	SEG:seg	UniParc:UPI0002543F9E	UniProt:M4DX50	MapMan:35.1	:

Description

AT3G15300 (E=4e-075) | VQ motif-containing protein

Coordinates

chrA01:+:23995810..23996460

Molecular Weight (calculated)

23490.4 Da

IEP (calculated)

9.754

GRAVY (calculated)

-0.811

Length

216 amino acids

Sequence
(BLAST)

001: MEIATKQGDS RNPSSTSCSS ASSSLHQHII TRSDHYPTTF VQADTSSFKQ VVQMLTGSSS PRSPDSPRPP TTPPGKGNFV IPPIKTTQPK KHSGNKLYER
101: RSNNNSLKNS LMINTLMIGG GNGAGSPRFS PRNQEILSPS CLDFPKLALN SPVTPLKHGG DGNDSDTFDR MSPLSEEERA ISEKGYYLHR SPRESEPQLL
201: PLFPVTSPRV SSSPEN

Best Arabidopsis Sequence Match ( AT3G15300.1 )
(BLAST)

001: MEISTNPPSS SSSSVSSSII NGSLHHHIIT RSDHYPTTFV QADSSSFKQV VQMLTGSSSP RSPDSPRPPT TPSGKGNFVI PPIKTAQPKK HSGNKLYERR
101: SHGGFNNNLK NSLMINTLMI GGGGAGSPRF SPRNQEILSP SCLDFPKLAL NSPVTPLKQG TNGNEGDPFD KMSPLSEEER GIADKGYYLH RSPISTPRDS
201: EPQLLPLFPV TSPRLSPEM

Arabidopsis Description

VQ19VQ motif-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDZ1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.