Factsheet for Bra008473.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37597	Canola	nucleus	100.0	100.0
Bra003566.1-P	Field mustard	nucleus	62.8	59.54
Bra035182.1-P	Field mustard	nucleus	59.76	58.68
Solyc03g117500.1.1	Tomato	plastid	43.9	42.86
PGSC0003DMT400036669	Potato	nucleus, plastid	43.29	42.77
VIT_09s0002g07540.t01	Wine grape	plastid	39.02	34.41
KRH47420	Soybean	plastid	40.24	34.2
KRH44484	Soybean	plastid	37.2	31.44
Bra010885.1-P	Field mustard	nucleus, plastid	27.44	27.78
Bra009343.1-P	Field mustard	cytosol, plastid	17.07	27.45
GSMUA_Achr3P19850_001	Banana	nucleus	32.32	25.73
Bra005472.1-P	Field mustard	mitochondrion, plastid	28.66	25.54
Bra022675.1-P	Field mustard	nucleus	35.98	24.48
Bra005995.1-P	Field mustard	cytosol, nucleus, plastid	25.61	24.14
Bra027262.1-P	Field mustard	plastid	32.32	23.56
Bra003032.1-P	Field mustard	nucleus	31.71	22.91
Bra021096.1-P	Field mustard	nucleus, plastid	29.88	22.69
Bra030082.1-P	Field mustard	nucleus, plastid	33.54	22.54

Protein Annotations

EnsemblPlants:Bra008473.1	EnsemblPlants:Bra008473.1-P	EnsemblPlantsGene:Bra008473	InterPro:VQ	PANTHER:PTHR33402	PANTHER:PTHR33402:SF3
PFAM:PF05678	UniParc:UPI0002546C42	UniProt:M4CW76	MapMan:35.1	:	:

Description

AT1G80450 (E=5e-067) | VQ motif-containing protein

Coordinates

chrA02:+:15857716..15858210

Molecular Weight (calculated)

18789.0 Da

IEP (calculated)

9.097

GRAVY (calculated)

-0.967

Length

164 amino acids

Sequence
(BLAST)

001: MSHKNHHSQR PSYATDPNTM FVQADPSNFR NIVQELTGAP PELSPVSTAQ HKLPLTPKKQ AFKLHERRQS SKRMELKINN DSLGQFNRGF LVSPVSHLDP
101: FWTRVSPQSA RENHHAMPEK EEQKVIAEKG FYFLPSPRSG DEPAPELLPL FPQRNENDHC HSSY

Best Arabidopsis Sequence Match ( AT1G80450.1 )
(BLAST)

001: MSHQQPPSYA TEPNTMFVQA DPSNFRNIVQ KLTGAPPDIS SSSFSAVSAA HQKLPLTPKK PAFKLHERRQ SSKKMELKVN NITNPNDAFS HFHRGFLVSP
101: VSHLDPFWAR VSPHSAREEH HAQPDKEEQK AIAEKGFYFL PSPRSGSEPA PELLPLFPLR SPNGTNHRIH EDNHRDS

Arabidopsis Description

VQ11VQ motif-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.