Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g117500.1.1 | Tomato | plastid | 33.98 | 41.67 |
| PGSC0003DMT400036669 | Potato | nucleus, plastid | 32.52 | 40.36 |
| VIT_09s0002g07540.t01 | Wine grape | plastid | 32.04 | 35.48 |
| CDX67947 | Canola | nucleus | 28.16 | 35.37 |
| KRH47420 | Soybean | plastid | 32.52 | 34.72 |
| CDY39978 | Canola | nucleus | 27.67 | 34.13 |
| GSMUA_Achr8P27670_001 | Banana | plastid | 17.96 | 33.95 |
| CDX79386 | Canola | plastid | 28.16 | 33.72 |
| Bra035182.1-P | Field mustard | nucleus | 27.18 | 33.53 |
| CDX87310 | Canola | nucleus | 27.18 | 33.53 |
| KRH44484 | Soybean | plastid | 31.07 | 32.99 |
| Bra008473.1-P | Field mustard | nucleus | 25.73 | 32.32 |
| CDY37597 | Canola | nucleus | 25.73 | 32.32 |
| Bra003566.1-P | Field mustard | nucleus | 26.21 | 31.21 |
| AT1G80450.1 | Thale cress | nucleus, plastid | 26.21 | 30.51 |
| CDY38669 | Canola | nucleus | 26.21 | 27.84 |
| GSMUA_Achr4P10440_001 | Banana | nucleus | 25.73 | 25.12 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.61 | 24.9 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 28.64 | 24.79 |
| GSMUA_Achr7P13760_001 | Banana | nucleus | 26.7 | 22.18 |
| GSMUA_Achr4P02580_001 | Banana | nucleus | 27.67 | 22.01 |
| GSMUA_Achr9P05800_001 | Banana | nucleus | 26.21 | 21.09 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.73 | 20.95 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P19850_001 | EnsemblPlants:GSMUA_Achr3T19850_001 | EnsemblPlantsGene:GSMUA_Achr3G19850_001 | InterPro:VQ | PANTHER:PTHR33402 | PANTHER:PTHR33402:SF3 |
| PFAM:PF05678 | SEG:seg | UniParc:UPI000296E0E7 | UniProt:M0SG51 | MapMan:35.2 | : |
Description
VQ domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G19850_001]
Coordinates
chr3:-:21134104..21134724
Molecular Weight (calculated)
21912.4 Da
IEP (calculated)
8.628
GRAVY (calculated)
-0.564
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALFPGSGN NNNSTDKLDA DALSCSSAAV TGSAGDNTTY VHADPANFRA LVQRLTGPAG NYSSVHKLPV ASPAAARNVG SKRQKLQERR RASTKLEIDI
101: GHSLYRASST TRCYRPHHHH CSNTTVSRRN GDEVGLLLSP ISTIDSCLLA SSASPTTATK DEEEDRAIAE KGFYLHPSPG SYNGDPPKLL PLFPLHSPKN
201: SVSSSE
101: GHSLYRASST TRCYRPHHHH CSNTTVSRRN GDEVGLLLSP ISTIDSCLLA SSASPTTATK DEEEDRAIAE KGFYLHPSPG SYNGDPPKLL PLFPLHSPKN
201: SVSSSE
001: MSHQQPPSYA TEPNTMFVQA DPSNFRNIVQ KLTGAPPDIS SSSFSAVSAA HQKLPLTPKK PAFKLHERRQ SSKKMELKVN NITNPNDAFS HFHRGFLVSP
101: VSHLDPFWAR VSPHSAREEH HAQPDKEEQK AIAEKGFYFL PSPRSGSEPA PELLPLFPLR SPNGTNHRIH EDNHRDS
101: VSHLDPFWAR VSPHSAREEH HAQPDKEEQK AIAEKGFYFL PSPRSGSEPA PELLPLFPLR SPNGTNHRIH EDNHRDS
Arabidopsis Description
VQ11VQ motif-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.