Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37597 | Canola | nucleus | 58.76 | 69.51 |
| CDX67947 | Canola | nucleus | 46.91 | 55.49 |
| CDX87310 | Canola | nucleus | 46.39 | 53.89 |
| CDY39978 | Canola | nucleus | 46.39 | 53.89 |
| CDX79386 | Canola | plastid | 43.81 | 49.42 |
| PGSC0003DMT400036669 | Potato | nucleus, plastid | 34.54 | 40.36 |
| Solyc03g117500.1.1 | Tomato | plastid | 34.02 | 39.29 |
| VIT_09s0002g07540.t01 | Wine grape | plastid | 31.96 | 33.33 |
| KRH47420 | Soybean | plastid | 32.47 | 32.64 |
| KRH44484 | Soybean | plastid | 29.38 | 29.38 |
| CDX69949 | Canola | plastid | 21.13 | 27.33 |
| CDY40742 | Canola | nucleus | 19.59 | 27.14 |
| GSMUA_Achr3P19850_001 | Banana | nucleus | 27.84 | 26.21 |
| CDX97648 | Canola | plastid | 29.38 | 25.68 |
| CDY20126 | Canola | nucleus, plastid | 28.35 | 25.46 |
| CDX90141 | Canola | nucleus, plastid | 29.38 | 25.11 |
| CDY17201 | Canola | plastid | 25.77 | 25.0 |
| CDY65903 | Canola | nucleus | 27.32 | 24.88 |
| CDY37691 | Canola | plastid | 25.26 | 24.62 |
| CDX96246 | Canola | nucleus | 26.8 | 24.53 |
| CDY27942 | Canola | nucleus | 25.26 | 24.5 |
| CDY32307 | Canola | nucleus | 27.84 | 24.32 |
| CDY35728 | Canola | nucleus, plastid | 28.87 | 24.03 |
| CDX98545 | Canola | plastid | 23.71 | 23.47 |
| CDY14349 | Canola | nucleus | 28.35 | 22.63 |
| CDX96247 | Canola | nucleus | 27.84 | 22.31 |
| CDY15683 | Canola | nucleus, plastid | 27.32 | 21.72 |
| CDX94599 | Canola | nucleus, plastid | 27.32 | 21.37 |
| CDY62120 | Canola | mitochondrion, nucleus | 21.65 | 21.21 |
| CDX81107 | Canola | nucleus | 19.59 | 17.84 |
| CDY60233 | Canola | cytosol, endoplasmic reticulum, plasma membrane, plastid | 19.07 | 15.48 |
Protein Annotations
| EnsemblPlants:CDY38669 | EnsemblPlantsGene:GSBRNA2T00066393001 | InterPro:VQ | PANTHER:PTHR33402 | PANTHER:PTHR33402:SF3 | PFAM:PF05678 |
| ProteinID:CDY38669 | ProteinID:CDY38669.1 | UniParc:UPI0004EDBEE7 | UniProt:A0A078HMT5 | MapMan:35.1 | : |
Description
BnaC02g23100DBnaC02g23100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMT5]
Coordinates
chrLK032429:-:148852..150114
Molecular Weight (calculated)
22273.5 Da
IEP (calculated)
10.412
GRAVY (calculated)
-0.977
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MLNMRKNVQS NEHYVNGYYY LKNSRGKTVE TQQIMTKSQM KAKGRKKEKT FVQADPSNFR NIVQELTGAP PELSPVSTAQ HKLPLTPKKQ AFKLHERRQS
101: SKRMELKINN DSLGQFNRGF LVSPVSHLDP FWTRVSPQSA RENHHAMPEK EEQKAIAGKG FYFLPSPRSG DEPAPELLPL FPQRNGNDYC HSSY
101: SKRMELKINN DSLGQFNRGF LVSPVSHLDP FWTRVSPQSA RENHHAMPEK EEQKAIAGKG FYFLPSPRSG DEPAPELLPL FPQRNGNDYC HSSY
001: MSHQQPPSYA TEPNTMFVQA DPSNFRNIVQ KLTGAPPDIS SSSFSAVSAA HQKLPLTPKK PAFKLHERRQ SSKKMELKVN NITNPNDAFS HFHRGFLVSP
101: VSHLDPFWAR VSPHSAREEH HAQPDKEEQK AIAEKGFYFL PSPRSGSEPA PELLPLFPLR SPNGTNHRIH EDNHRDS
101: VSHLDPFWAR VSPHSAREEH HAQPDKEEQK AIAEKGFYFL PSPRSGSEPA PELLPLFPLR SPNGTNHRIH EDNHRDS
Arabidopsis Description
VQ11VQ motif-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.