Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96246 | Canola | nucleus | 73.97 | 84.43 |
| CDY14349 | Canola | nucleus | 79.34 | 79.01 |
| CDY65903 | Canola | nucleus | 63.22 | 71.83 |
| AT5G53830.1 | Thale cress | nucleus | 67.36 | 67.08 |
| VIT_19s0014g02490.t01 | Wine grape | nucleus, plastid | 44.63 | 51.43 |
| KRH26132 | Soybean | nucleus, plastid | 50.41 | 49.19 |
| KRH22072 | Soybean | nucleus, plastid | 50.41 | 49.0 |
| KRH27258 | Soybean | nucleus, plastid | 49.59 | 48.78 |
| PGSC0003DMT400097260 | Potato | nucleus, plastid | 46.28 | 48.7 |
| CDX97648 | Canola | plastid | 44.63 | 48.65 |
| KRH38333 | Soybean | plastid | 40.08 | 48.5 |
| KRH55250 | Soybean | nucleus, plastid | 48.76 | 48.36 |
| Solyc07g063070.1.1 | Tomato | nucleus, plastid | 46.28 | 48.07 |
| CDY20126 | Canola | nucleus, plastid | 41.74 | 46.76 |
| CDY32307 | Canola | nucleus | 42.56 | 46.4 |
| GSMUA_Achr8P27670_001 | Banana | plastid | 20.66 | 45.87 |
| CDX90141 | Canola | nucleus, plastid | 42.15 | 44.93 |
| CDX98545 | Canola | plastid | 35.54 | 43.88 |
| CDY35728 | Canola | nucleus, plastid | 41.74 | 43.35 |
| TraesCS3D01G140600.1 | Wheat | plastid | 37.19 | 42.86 |
| TraesCS3B01G158200.1 | Wheat | plastid | 37.19 | 42.86 |
| Zm00001d008878_P001 | Maize | cytosol | 36.78 | 41.98 |
| TraesCS3A01G313700.1 | Wheat | plastid | 36.36 | 41.9 |
| HORVU3Hr1G026840.1 | Barley | plastid | 36.36 | 41.51 |
| CDY15683 | Canola | nucleus, plastid | 41.74 | 41.39 |
| Os01t0201250-00 | Rice | plastid | 35.95 | 41.04 |
| EES00109 | Sorghum | cytosol, nucleus, plasma membrane, plastid | 35.95 | 39.73 |
| CDX94599 | Canola | nucleus, plastid | 40.5 | 39.52 |
| CDY37691 | Canola | plastid | 31.82 | 38.69 |
| TraesCS3B01G307300.1 | Wheat | nucleus, plastid | 36.78 | 38.53 |
| EES03601 | Sorghum | nucleus, plastid | 37.6 | 38.4 |
| GSMUA_Achr4P10440_001 | Banana | nucleus | 33.47 | 38.39 |
| Zm00001d039428_P001 | Maize | plastid | 33.88 | 38.14 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.43 | 37.96 |
| TraesCS3A01G273600.1 | Wheat | nucleus, plastid | 37.19 | 37.82 |
| TraesCS3D01G272900.1 | Wheat | nucleus, plastid | 37.19 | 37.82 |
| Zm00001d038810_P001 | Maize | plastid | 33.88 | 37.79 |
| Zm00001d010759_P001 | Maize | plastid | 34.3 | 37.73 |
| TraesCS1A01G338700.1 | Wheat | plastid | 37.19 | 37.5 |
| GSMUA_Achr7P13760_001 | Banana | nucleus | 38.43 | 37.5 |
| CDX67947 | Canola | nucleus | 25.21 | 37.2 |
| TraesCS1B01G351200.1 | Wheat | plastid | 36.36 | 37.13 |
| GSMUA_Achr4P02580_001 | Banana | nucleus | 39.67 | 37.07 |
| TraesCS1D01G340900.1 | Wheat | plastid | 36.78 | 36.78 |
| CDX69949 | Canola | plastid | 22.73 | 36.67 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 35.95 | 36.55 |
| Os01t0747800-01 | Rice | nucleus | 34.71 | 36.36 |
| CDY37597 | Canola | nucleus | 24.38 | 35.98 |
| EES18519 | Sorghum | plastid | 37.19 | 35.57 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.19 | 35.57 |
| CDY39978 | Canola | nucleus | 24.38 | 35.33 |
| Zm00001d043450_P001 | Maize | nucleus, plastid | 36.36 | 35.06 |
| CDX87310 | Canola | nucleus | 23.97 | 34.73 |
| GSMUA_Achr9P05800_001 | Banana | nucleus | 36.36 | 34.38 |
| CDX79386 | Canola | plastid | 24.38 | 34.3 |
| Os05t0519000-00 | Rice | plastid | 38.02 | 34.07 |
| CDY27942 | Canola | nucleus | 26.86 | 32.5 |
| HORVU1Hr1G076390.1 | Barley | plastid | 36.36 | 32.12 |
| HORVU3Hr1G071320.1 | Barley | plastid | 38.02 | 31.19 |
| CDY40742 | Canola | nucleus | 17.77 | 30.71 |
| CDY17201 | Canola | plastid | 25.21 | 30.5 |
| CDY38669 | Canola | nucleus | 22.31 | 27.84 |
| CDY62120 | Canola | mitochondrion, nucleus | 21.9 | 26.77 |
| CDX81107 | Canola | nucleus | 23.55 | 26.76 |
| CDY60233 | Canola | cytosol, endoplasmic reticulum, plasma membrane, plastid | 21.9 | 22.18 |
Protein Annotations
| EnsemblPlants:CDX96247 | EnsemblPlantsGene:GSBRNA2T00102374001 | InterPro:VQ | PANTHER:PTHR33402 | PANTHER:PTHR33402:SF6 | PFAM:PF05678 |
| ProteinID:CDX96247 | ProteinID:CDX96247.1 | SEG:seg | UniParc:UPI0004EB532E | MapMan:35.1 | : |
Description
BnaC02g14040D
Coordinates
chrLK031893:+:1197059..1197787
Molecular Weight (calculated)
26972.6 Da
IEP (calculated)
10.249
GRAVY (calculated)
-0.852
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVSSTSSIC SKPEQIMQNY PAIITSPRFQ PQTRSPRHHH HDQHQHLSNP YPTTFVQADT STFKQVVQML TGSSTDTNTE NHHKAPPPVN NKGGFSVPPI
101: KKTNSFKLYE RRQNNNNNTF GKNDLMINTL RLQNSQRLMF SSGHNGHQSP RFSPRNSSPE SVLLSPSMLD FPKLGLNSPV TPLRSNDDPL NKSSPLSLGS
201: SSEEDKAIAE KGFYLHPSPV STPRDSQPLL LPLFPVTSPR NP
101: KKTNSFKLYE RRQNNNNNTF GKNDLMINTL RLQNSQRLMF SSGHNGHQSP RFSPRNSSPE SVLLSPSMLD FPKLGLNSPV TPLRSNDDPL NKSSPLSLGS
201: SSEEDKAIAE KGFYLHPSPV STPRDSQPLL LPLFPVTSPR NP
001: MEVSTSSMSS KPEQMQNPPP MISSPRFQPQ IISPHHHDQH QHLSNPYPTT FVQADTSTFK QVVQMLTGSS TDTTTGKHHE APSPVNNNNK GSSFSIPPIK
101: KTNSFKLYER RQNNNNMFAK NDLMINTLRL QNSQRLMFTG GNSSHHQSPR FSPRNSSSSE NILLSPSMLD FPKLGLNSPV TPLRSNDDPF NKSSPLSLGN
201: SSEEDKAIAD KGFYLHPSPV STPRDSQPLL LPLFPVASPA RNS
101: KTNSFKLYER RQNNNNMFAK NDLMINTLRL QNSQRLMFTG GNSSHHQSPR FSPRNSSSSE NILLSPSMLD FPKLGLNSPV TPLRSNDDPF NKSSPLSLGN
201: SSEEDKAIAD KGFYLHPSPV STPRDSQPLL LPLFPVASPA RNS
Arabidopsis Description
VQ33VQ motif-containing protein 33 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.