CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0747800-01	Rice	nucleus	68.78	70.56
Zm00001d043450_P001	Maize	nucleus, plastid	70.89	66.93
TraesCS3A01G273600.1	Wheat	nucleus, plastid	65.82	65.55
TraesCS3B01G307300.1	Wheat	nucleus, plastid	63.71	65.37
TraesCS3D01G272900.1	Wheat	nucleus, plastid	65.4	65.13
EES18519	Sorghum	plastid	56.12	52.57
VIT_19s0014g02490.t01	Wine grape	nucleus, plastid	44.73	50.48
HORVU3Hr1G071320.1	Barley	plastid	60.76	48.81
Solyc07g063070.1.1	Tomato	nucleus, plastid	46.84	47.64
PGSC0003DMT400097260	Potato	nucleus, plastid	45.99	47.39
GSMUA_Achr4P10440_001	Banana	nucleus	41.35	46.45
CDY20126	Canola	nucleus, plastid	41.35	45.37
Bra021096.1-P	Field mustard	nucleus, plastid	41.35	45.37
CDX90141	Canola	nucleus, plastid	43.04	44.93
KRH10893	Soybean	nucleus	37.55	44.72
Bra010885.1-P	Field mustard	nucleus, plastid	30.38	44.44
CDX97648	Canola	plastid	41.35	44.14
KRH38333	Soybean	plastid	37.13	44.0
KRH27258	Soybean	nucleus, plastid	45.57	43.9
CDY32307	Canola	nucleus	40.93	43.69
Bra027262.1-P	Field mustard	plastid	41.35	43.56
EES00109	Sorghum	cytosol, nucleus, plasma membrane, plastid	40.08	43.38
CDY35728	Canola	nucleus, plastid	42.62	43.35
AT3G15300.1	Thale cress	nucleus, plastid	39.24	42.47
VIT_00s0527g00020.t01	Wine grape	cytosol, nucleus, plastid	29.11	42.07
CDX96246	Canola	nucleus	37.13	41.51
KRH22072	Soybean	nucleus, plastid	43.46	41.37
KRH26132	Soybean	nucleus, plastid	43.04	41.13
KRH55250	Soybean	nucleus, plastid	42.19	40.98
CDY65903	Canola	nucleus	36.71	40.85
CDY37691	Canola	plastid	34.18	40.7
Bra003032.1-P	Field mustard	nucleus	38.82	40.53
CDX98545	Canola	plastid	33.33	40.31
Solyc02g078030.1.1	Tomato	nucleus, plastid	44.3	39.92
PGSC0003DMT400076377	Potato	nucleus	43.88	39.69
CDY14349	Canola	nucleus	40.51	39.51
AT5G53830.1	Thale cress	nucleus	40.08	39.09
Bra022675.1-P	Field mustard	nucleus	39.24	38.59
AT1G28280.1	Thale cress	nucleus, plastid	40.08	38.46
CDY15683	Canola	nucleus, plastid	38.82	37.7
Bra030082.1-P	Field mustard	nucleus, plastid	38.82	37.7
CDX96247	Canola	nucleus	38.4	37.6
CDX94599	Canola	nucleus, plastid	38.4	36.69
KRH21417	Soybean	nucleus	39.66	36.15
AT2G33780.1	Thale cress	nucleus	30.38	35.29
KRH04611	Soybean	plastid	18.99	34.62
KRH20439	Soybean	nucleus, plastid	39.24	33.1
KRH37938	Soybean	mitochondrion	18.14	32.82
Bra005472.1-P	Field mustard	mitochondrion, plastid	25.32	32.61
KRH50064	Soybean	nucleus, plastid	41.35	31.61
CDY17201	Canola	plastid	25.74	30.5
CDY27942	Canola	nucleus	25.74	30.5

Protein Annotations

EnsemblPlants:EES03601	EnsemblPlantsGene:SORBI_3003G294400	EntrezGene:8062185	InterPro:VQ	PANTHER:PTHR33402	PANTHER:PTHR33402:SF8
PFAM:PF05678	ProteinID:EES03601	ProteinID:EES03601.1	RefSeq:XP_002458481.1	SEG:seg	unigene:Sbi.12970
UniParc:UPI0001A84D78	UniProt:C5XK25	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:62677714..62679117

Molecular Weight (calculated)

25068.6 Da

IEP (calculated)

11.018

GRAVY (calculated)

-0.595

Length

237 amino acids

Sequence
(BLAST)

001: MEVSTKQLLP MPHQRDPNSP SSSTSSSSSS STSPSHPHHH RAQQPHKLPQ SPRPIPRTID TTPFPTTFVQ ADTTSFKQVV QMLTGAEQPA KNDATTTAGA
101: AAANGGGQAA SGAACRPKKP SFKLYERRSS LKNLKMIAPL AMGPPPSPRT RATAPEILSP SVLDFPSLRL SSPVTPLTGD PFNRSPASTS SSSEEAERAA
201: IAERGFFLHP SPRGGAEPPR LLPLFPVTSP RMAAPSE

Best Arabidopsis Sequence Match ( AT1G28280.2 )
(BLAST)

001: MENSPRYREA TNLIPSPRCH NSNNSCGMSS SSESNKPPTT PTRHVTTRSE SGNPYPTTFV QADTSSFKQV VQMLTGSAER PKHGSSLKPN PTHHQPDPRS
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSV NKR

Arabidopsis Description

VQ4VQ motif-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q5M750]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.