CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26132	Soybean	nucleus, plastid	86.48	85.08
KRH27258	Soybean	nucleus, plastid	68.03	67.48
KRH22072	Soybean	nucleus, plastid	65.57	64.26
KRH38333	Soybean	plastid	50.0	61.0
VIT_19s0014g02490.t01	Wine grape	nucleus, plastid	52.46	60.95
PGSC0003DMT400097260	Potato	nucleus, plastid	54.92	58.26
Solyc07g063070.1.1	Tomato	nucleus, plastid	55.33	57.94
CDX97648	Canola	plastid	49.59	54.5
AT3G15300.1	Thale cress	nucleus, plastid	48.77	54.34
Bra021096.1-P	Field mustard	nucleus, plastid	47.95	54.17
Bra027262.1-P	Field mustard	plastid	49.59	53.78
CDY20126	Canola	nucleus, plastid	47.54	53.7
CDY32307	Canola	nucleus	47.95	52.7
Bra003032.1-P	Field mustard	nucleus	47.54	51.1
CDX96246	Canola	nucleus	44.26	50.94
Bra022675.1-P	Field mustard	nucleus	48.77	49.38
CDX98545	Canola	plastid	39.34	48.98
CDY65903	Canola	nucleus	42.62	48.83
CDX96247	Canola	nucleus	48.36	48.76
GSMUA_Achr8P27670_001	Banana	plastid	21.72	48.62
AT5G53830.1	Thale cress	nucleus	47.95	48.15
CDY14349	Canola	nucleus	47.95	48.15
KRH10893	Soybean	nucleus	37.3	45.73
GSMUA_AchrUn_...	Banana	nucleus	45.49	45.31
GSMUA_Achr7P13760_001	Banana	nucleus	45.08	44.35
GSMUA_Achr4P10440_001	Banana	nucleus	38.11	44.08
TraesCS3B01G158200.1	Wheat	plastid	37.3	43.33
TraesCS3D01G140600.1	Wheat	plastid	37.3	43.33
HORVU3Hr1G026840.1	Barley	plastid	36.89	42.45
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	41.39	42.44
TraesCS3A01G313700.1	Wheat	plastid	36.48	42.38
EES03601	Sorghum	nucleus, plastid	40.98	42.19
TraesCS3A01G273600.1	Wheat	nucleus, plastid	40.98	42.02
TraesCS3D01G272900.1	Wheat	nucleus, plastid	40.98	42.02
TraesCS3B01G307300.1	Wheat	nucleus, plastid	39.75	41.99
TraesCS1B01G351200.1	Wheat	plastid	40.57	41.77
Zm00001d010759_P001	Maize	plastid	37.3	41.36
GSMUA_Achr4P02580_001	Banana	nucleus	43.85	41.31
Zm00001d008878_P001	Maize	cytosol	35.66	41.04
Zm00001d038810_P001	Maize	plastid	36.48	41.01
EES18519	Sorghum	plastid	42.21	40.71
EES00109	Sorghum	cytosol, nucleus, plasma membrane, plastid	36.48	40.64
Os01t0201250-00	Rice	plastid	34.84	40.09
TraesCS1D01G340900.1	Wheat	plastid	39.75	40.08
Zm00001d039428_P001	Maize	plastid	35.25	40.0
TraesCS1A01G338700.1	Wheat	plastid	39.34	40.0
Os01t0747800-01	Rice	nucleus	37.7	39.83
GSMUA_Achr9P05800_001	Banana	nucleus	41.39	39.45
Os05t0519000-00	Rice	plastid	43.44	39.26
GSMUA_AchrUn_...	Banana	nucleus	40.57	39.13
Zm00001d043450_P001	Maize	nucleus, plastid	40.16	39.04
KRH20439	Soybean	nucleus, plastid	43.44	37.72
KRH21417	Soybean	nucleus	39.75	37.31
KRH04611	Soybean	plastid	19.67	36.92
HORVU1Hr1G076390.1	Barley	plastid	39.34	35.04
KRH47420	Soybean	plastid	27.46	34.72
KRH44484	Soybean	plastid	27.46	34.54
KRH37938	Soybean	mitochondrion	18.44	34.35
KRH50064	Soybean	nucleus, plastid	42.62	33.55
HORVU3Hr1G071320.1	Barley	plastid	39.34	32.54
KRH59700	Soybean	nucleus	24.18	31.72
KRH41023	Soybean	nucleus	21.72	30.46

Protein Annotations

EMBL:ACUP02003938	EnsemblPlants:KRH55250	EnsemblPlantsGene:GLYMA_06G240300	InterPro:VQ	PANTHER:PTHR33402	PANTHER:PTHR33402:SF6
PFAM:PF05678	ProteinID:KRH55250	ProteinID:KRH55250.1	SEG:seg	UniParc:UPI00023C398E	UniProt:I1KDU4
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:39620364..39622226

Molecular Weight (calculated)

26841.3 Da

IEP (calculated)

8.232

GRAVY (calculated)

-0.752

Length

244 amino acids

Sequence
(BLAST)

001: MKINLRLQET ETPPSMNNSP RSNLSNNNCT NNNSIGIQIP TTPKTIPRSD STTNPYPTTF VQADTSTFKH VVQMLTGSSE TTNPQQQLQD PVQPQSSSSK
101: NFNIPPMKTT PKKQQGFKLY ERRNNNNHLK NTLMINTLVP NFAHSSGFSS SSSSPCNKPE ILSPSLLDFP SLTLSSPVTP LNDDPFDKSS SLPSLGSTSS
201: EEERAIAEKG FYLHPSPMST PRDFEPQLLP LFPVTSPRVS ESTT

Best Arabidopsis Sequence Match ( AT3G15300.1 )
(BLAST)

001: MEISTNPPSS SSSSVSSSII NGSLHHHIIT RSDHYPTTFV QADSSSFKQV VQMLTGSSSP RSPDSPRPPT TPSGKGNFVI PPIKTAQPKK HSGNKLYERR
101: SHGGFNNNLK NSLMINTLMI GGGGAGSPRF SPRNQEILSP SCLDFPKLAL NSPVTPLKQG TNGNEGDPFD KMSPLSEEER GIADKGYYLH RSPISTPRDS
201: EPQLLPLFPV TSPRLSPEM

Arabidopsis Description

VQ19VQ motif-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDZ1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.