CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55250	Soybean	nucleus, plastid	85.08	86.48
KRH27258	Soybean	nucleus, plastid	66.13	66.67
VIT_19s0014g02490.t01	Wine grape	nucleus, plastid	54.44	64.29
KRH22072	Soybean	nucleus, plastid	64.52	64.26
KRH38333	Soybean	plastid	50.0	62.0
PGSC0003DMT400097260	Potato	nucleus, plastid	56.45	60.87
Solyc07g063070.1.1	Tomato	nucleus, plastid	56.45	60.09
AT3G15300.1	Thale cress	nucleus, plastid	49.19	55.71
Bra021096.1-P	Field mustard	nucleus, plastid	47.18	54.17
CDX97648	Canola	plastid	48.39	54.05
CDY20126	Canola	nucleus, plastid	46.77	53.7
Bra027262.1-P	Field mustard	plastid	48.39	53.33
CDY32307	Canola	nucleus	47.18	52.7
CDX96246	Canola	nucleus	44.35	51.89
Bra022675.1-P	Field mustard	nucleus	49.19	50.62
CDX96247	Canola	nucleus	49.19	50.41
Bra003032.1-P	Field mustard	nucleus	45.56	49.78
CDX98545	Canola	plastid	38.31	48.47
CDY65903	Canola	nucleus	41.13	47.89
AT5G53830.1	Thale cress	nucleus	46.77	47.74
CDY14349	Canola	nucleus	46.77	47.74
GSMUA_Achr8P27670_001	Banana	plastid	20.97	47.71
KRH10893	Soybean	nucleus	37.5	46.73
GSMUA_AchrUn_...	Banana	nucleus	45.16	45.71
GSMUA_Achr7P13760_001	Banana	nucleus	45.16	45.16
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	41.53	43.28
GSMUA_Achr4P10440_001	Banana	nucleus	36.69	43.13
EES03601	Sorghum	nucleus, plastid	41.13	43.04
GSMUA_Achr4P02580_001	Banana	nucleus	44.76	42.86
TraesCS3A01G273600.1	Wheat	nucleus, plastid	40.73	42.44
TraesCS3D01G272900.1	Wheat	nucleus, plastid	40.73	42.44
TraesCS3B01G158200.1	Wheat	plastid	35.89	42.38
TraesCS3A01G313700.1	Wheat	plastid	35.89	42.38
TraesCS3D01G140600.1	Wheat	plastid	35.89	42.38
TraesCS3B01G307300.1	Wheat	nucleus, plastid	39.11	41.99
HORVU3Hr1G026840.1	Barley	plastid	35.89	41.98
EES18519	Sorghum	plastid	42.74	41.9
TraesCS1B01G351200.1	Wheat	plastid	39.92	41.77
Zm00001d038810_P001	Maize	plastid	36.29	41.47
Zm00001d010759_P001	Maize	plastid	36.69	41.36
TraesCS1A01G338700.1	Wheat	plastid	39.92	41.25
Zm00001d008878_P001	Maize	cytosol	35.08	41.04
Os01t0747800-01	Rice	nucleus	37.9	40.69
Os01t0201250-00	Rice	plastid	34.68	40.57
TraesCS1D01G340900.1	Wheat	plastid	39.52	40.5
EES00109	Sorghum	cytosol, nucleus, plasma membrane, plastid	35.48	40.18
GSMUA_Achr9P05800_001	Banana	nucleus	41.13	39.84
Zm00001d039428_P001	Maize	plastid	34.27	39.53
Os05t0519000-00	Rice	plastid	42.74	39.26
GSMUA_AchrUn_...	Banana	nucleus	39.92	39.13
Zm00001d043450_P001	Maize	nucleus, plastid	39.52	39.04
KRH21417	Soybean	nucleus	39.92	38.08
KRH04611	Soybean	plastid	19.35	36.92
KRH20439	Soybean	nucleus, plastid	41.53	36.65
KRH47420	Soybean	plastid	27.82	35.75
KRH37938	Soybean	mitochondrion	18.55	35.11
HORVU1Hr1G076390.1	Barley	plastid	38.31	34.67
HORVU3Hr1G071320.1	Barley	plastid	39.92	33.56
KRH50064	Soybean	nucleus, plastid	41.13	32.9
KRH59700	Soybean	nucleus	24.6	32.8
KRH44484	Soybean	plastid	25.4	32.47
KRH41023	Soybean	nucleus	21.77	31.03

Protein Annotations

EMBL:ACUP02007544	EnsemblPlants:KRH26132	EnsemblPlantsGene:GLYMA_12G153600	EntrezGene:100797647	InterPro:VQ	PANTHER:PTHR33402
PANTHER:PTHR33402:SF6	PFAM:PF05678	ProteinID:KRH26131.1	ProteinID:KRH26132	ProteinID:KRH26132.1	SEG:seg
UniParc:UPI000233D777	UniProt:I1LT47	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:23455875..23457485

Molecular Weight (calculated)

27501.0 Da

IEP (calculated)

7.669

GRAVY (calculated)

-0.820

Length

248 amino acids

Sequence
(BLAST)

001: MEISLRLQDT ETPPSMNNSP RSNLSNNCCT NYNNSIGIQI PTTPKTILRS DSTNPYPTTF VQADTSTFKQ VVQMLTGSSE TTKPQLQQQQ QQQQQDLVQP
101: QSSSSKNFNI PPMKATPKKQ QGFKLYERRN NNNNHHLKNT LMINTLVPNF AHSSGFSSSH HNKPEILSPS LLDFPSLTLS SPVTPLNDDP FDKSSSPSLG
201: STSSEEERAI AEKGFYLHPS PMSTPRDSEP QLLPLFPVTS PRVSESPS

Best Arabidopsis Sequence Match ( AT3G15300.1 )
(BLAST)

001: MEISTNPPSS SSSSVSSSII NGSLHHHIIT RSDHYPTTFV QADSSSFKQV VQMLTGSSSP RSPDSPRPPT TPSGKGNFVI PPIKTAQPKK HSGNKLYERR
101: SHGGFNNNLK NSLMINTLMI GGGGAGSPRF SPRNQEILSP SCLDFPKLAL NSPVTPLKQG TNGNEGDPFD KMSPLSEEER GIADKGYYLH RSPISTPRDS
201: EPQLLPLFPV TSPRLSPEM

Arabidopsis Description

VQ19VQ motif-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDZ1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.