Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G140600.1 | Wheat | plastid | 95.24 | 95.24 |
| TraesCS3B01G158200.1 | Wheat | plastid | 95.24 | 95.24 |
| HORVU3Hr1G026840.1 | Barley | plastid | 94.29 | 93.4 |
| EES00109 | Sorghum | cytosol, nucleus, plasma membrane, plastid | 73.33 | 70.32 |
| Zm00001d039428_P001 | Maize | plastid | 71.9 | 70.23 |
| Zm00001d008878_P001 | Maize | cytosol | 69.52 | 68.87 |
| Os01t0201250-00 | Rice | plastid | 64.29 | 63.68 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.38 | 43.48 |
| VIT_19s0014g02490.t01 | Wine grape | nucleus, plastid | 43.33 | 43.33 |
| VIT_00s0527g00020.t01 | Wine grape | cytosol, nucleus, plastid | 33.81 | 43.29 |
| KRH10893 | Soybean | nucleus | 40.95 | 43.22 |
| TraesCS1A01G338700.1 | Wheat | plastid | 48.57 | 42.5 |
| PGSC0003DMT400097260 | Potato | nucleus, plastid | 45.71 | 41.74 |
| TraesCS3A01G273600.1 | Wheat | nucleus, plastid | 47.14 | 41.6 |
| Solyc07g063070.1.1 | Tomato | nucleus, plastid | 44.76 | 40.34 |
| CDX96246 | Canola | nucleus | 40.0 | 39.62 |
| KRH38333 | Soybean | plastid | 36.67 | 38.5 |
| KRH27258 | Soybean | nucleus, plastid | 44.76 | 38.21 |
| CDY35728 | Canola | nucleus, plastid | 42.38 | 38.2 |
| CDY37691 | Canola | plastid | 36.19 | 38.19 |
| CDX90141 | Canola | nucleus, plastid | 40.95 | 37.89 |
| Bra021096.1-P | Field mustard | nucleus, plastid | 38.57 | 37.5 |
| Bra003032.1-P | Field mustard | nucleus | 40.48 | 37.44 |
| CDX97648 | Canola | plastid | 39.52 | 37.39 |
| CDY65903 | Canola | nucleus | 37.62 | 37.09 |
| CDY20126 | Canola | nucleus, plastid | 38.1 | 37.04 |
| Bra010885.1-P | Field mustard | nucleus, plastid | 28.57 | 37.04 |
| KRH22072 | Soybean | nucleus, plastid | 43.81 | 36.95 |
| Bra022675.1-P | Field mustard | nucleus | 42.38 | 36.93 |
| Bra027262.1-P | Field mustard | plastid | 39.52 | 36.89 |
| CDX98545 | Canola | plastid | 34.29 | 36.73 |
| CDY32307 | Canola | nucleus | 38.57 | 36.49 |
| KRH55250 | Soybean | nucleus, plastid | 42.38 | 36.48 |
| CDX96247 | Canola | nucleus | 41.9 | 36.36 |
| AT5G53830.1 | Thale cress | nucleus | 41.9 | 36.21 |
| AT3G15300.1 | Thale cress | nucleus, plastid | 37.62 | 36.07 |
| AT1G28280.1 | Thale cress | nucleus, plastid | 42.38 | 36.03 |
| KRH26132 | Soybean | nucleus, plastid | 42.38 | 35.89 |
| CDY14349 | Canola | nucleus | 40.95 | 35.39 |
| KRH21417 | Soybean | nucleus | 42.38 | 34.23 |
| Solyc02g078030.1.1 | Tomato | nucleus, plastid | 42.86 | 34.22 |
| CDY15683 | Canola | nucleus, plastid | 39.05 | 33.61 |
| Bra030082.1-P | Field mustard | nucleus, plastid | 39.05 | 33.61 |
| PGSC0003DMT400076377 | Potato | nucleus | 41.9 | 33.59 |
| CDX94599 | Canola | nucleus, plastid | 39.52 | 33.47 |
| KRH04611 | Soybean | plastid | 20.48 | 33.08 |
| AT2G33780.1 | Thale cress | nucleus | 31.9 | 32.84 |
| KRH37938 | Soybean | mitochondrion | 20.0 | 32.06 |
| Bra005472.1-P | Field mustard | mitochondrion, plastid | 27.14 | 30.98 |
| KRH20439 | Soybean | nucleus, plastid | 40.48 | 30.25 |
| KRH50064 | Soybean | nucleus, plastid | 42.38 | 28.71 |
| CDY17201 | Canola | plastid | 26.67 | 28.0 |
| CDY27942 | Canola | nucleus | 26.19 | 27.5 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G313700.1 | EnsemblPlantsGene:TraesCS3A01G313700 | InterPro:VQ | PANTHER:PTHR33402 | PANTHER:PTHR33402:SF14 | PFAM:PF05678 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3A:+:553560982..553561614
Molecular Weight (calculated)
21496.8 Da
IEP (calculated)
10.264
GRAVY (calculated)
-0.247
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MEATTQERPA PPPPSPSSVQ MQLPHAAADP SNPFPTTFVQ ADTTSFKQVV QILTGTPETA AAAAAGGAAG APAAKPAPTP TGPKKPAFKL YERRGSMKSL
101: KMLCPLLPAA FAAGGSGGCS GFSPRGFSPR GLEVLSPSML DFPSLALGSP VTPLPPLPGS REAAAAEDRA IAEKGFYLHP SPRGNASGRG DLTPPPRLLP
201: LFPLQSPTRQ
101: KMLCPLLPAA FAAGGSGGCS GFSPRGFSPR GLEVLSPSML DFPSLALGSP VTPLPPLPGS REAAAAEDRA IAEKGFYLHP SPRGNASGRG DLTPPPRLLP
201: LFPLQSPTRQ
001: MENSPRYREA TNLIPSPRCH NSNNSCGMSS SSESNKPPTT PTRHVTTRSE SGNPYPTTFV QADTSSFKQV VQMLTGSAER PKHGSSLKPN PTHHQPDPRS
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSV NKR
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSV NKR
Arabidopsis Description
VQ4VQ motif-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q5M750]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.