Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030082.1-P | Field mustard | nucleus, plastid | 77.33 | 78.28 |
| CDY15683 | Canola | nucleus, plastid | 77.33 | 78.28 |
| CDY35728 | Canola | nucleus, plastid | 72.87 | 77.25 |
| Bra010885.1-P | Field mustard | nucleus, plastid | 50.2 | 76.54 |
| CDX94599 | Canola | nucleus, plastid | 76.11 | 75.81 |
| CDX90141 | Canola | nucleus, plastid | 64.78 | 70.48 |
| VIT_00s0527g00020.t01 | Wine grape | cytosol, nucleus, plastid | 41.3 | 62.2 |
| KRH10893 | Soybean | nucleus | 44.94 | 55.78 |
| PGSC0003DMT400076377 | Potato | nucleus | 53.85 | 50.76 |
| KRH04611 | Soybean | plastid | 26.32 | 50.0 |
| Solyc02g078030.1.1 | Tomato | nucleus, plastid | 53.04 | 49.81 |
| AT2G33780.1 | Thale cress | nucleus | 40.08 | 48.53 |
| KRH37938 | Soybean | mitochondrion | 25.51 | 48.09 |
| GSMUA_Achr4P10440_001 | Banana | nucleus | 39.27 | 45.97 |
| GSMUA_Achr8P27670_001 | Banana | plastid | 20.24 | 45.87 |
| KRH20439 | Soybean | nucleus, plastid | 51.01 | 44.84 |
| AT3G15300.1 | Thale cress | nucleus, plastid | 39.68 | 44.75 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.75 | 44.66 |
| TraesCS1A01G338700.1 | Wheat | plastid | 42.51 | 43.75 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 42.11 | 43.7 |
| GSMUA_Achr7P13760_001 | Banana | nucleus | 43.72 | 43.55 |
| TraesCS1B01G351200.1 | Wheat | plastid | 41.7 | 43.46 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.51 | 42.86 |
| Zm00001d038810_P001 | Maize | plastid | 37.25 | 42.4 |
| TraesCS3A01G313700.1 | Wheat | plastid | 36.03 | 42.38 |
| KRH21417 | Soybean | nucleus | 44.53 | 42.31 |
| Zm00001d010759_P001 | Maize | plastid | 37.65 | 42.27 |
| TraesCS3B01G158200.1 | Wheat | plastid | 35.22 | 41.43 |
| TraesCS3D01G140600.1 | Wheat | plastid | 35.22 | 41.43 |
| Os01t0747800-01 | Rice | nucleus | 38.46 | 41.13 |
| HORVU3Hr1G026840.1 | Barley | plastid | 35.22 | 41.04 |
| GSMUA_Achr4P02580_001 | Banana | nucleus | 42.91 | 40.93 |
| Zm00001d008878_P001 | Maize | cytosol | 34.82 | 40.57 |
| TraesCS1D01G340900.1 | Wheat | plastid | 39.68 | 40.5 |
| GSMUA_Achr9P05800_001 | Banana | nucleus | 41.7 | 40.23 |
| EES03601 | Sorghum | nucleus, plastid | 38.46 | 40.08 |
| Zm00001d039428_P001 | Maize | plastid | 34.82 | 40.0 |
| AT5G53830.1 | Thale cress | nucleus | 39.27 | 39.92 |
| EES00109 | Sorghum | cytosol, nucleus, plasma membrane, plastid | 35.22 | 39.73 |
| TraesCS3D01G272900.1 | Wheat | nucleus, plastid | 37.25 | 38.66 |
| TraesCS3A01G273600.1 | Wheat | nucleus, plastid | 37.25 | 38.66 |
| Zm00001d043450_P001 | Maize | nucleus, plastid | 39.27 | 38.65 |
| TraesCS3B01G307300.1 | Wheat | nucleus, plastid | 36.03 | 38.53 |
| Os01t0201250-00 | Rice | plastid | 32.79 | 38.21 |
| Os05t0519000-00 | Rice | plastid | 41.7 | 38.15 |
| EES18519 | Sorghum | plastid | 38.46 | 37.55 |
| KRH50064 | Soybean | nucleus, plastid | 45.75 | 36.45 |
| HORVU1Hr1G076390.1 | Barley | plastid | 40.08 | 36.13 |
| AT5G08480.2 | Thale cress | cytosol, plastid | 22.67 | 32.37 |
| AT1G80450.1 | Thale cress | nucleus, plastid | 22.67 | 31.64 |
| HORVU3Hr1G071320.1 | Barley | plastid | 36.84 | 30.85 |
Protein Annotations
| MapMan:35.1 | EntrezGene:839722 | UniProt:A0A178W562 | ProteinID:AAF98427.1 | ProteinID:AEE30940.1 | EMBL:AF370468 |
| ArrayExpress:AT1G28280 | EnsemblPlantsGene:AT1G28280 | RefSeq:AT1G28280 | TAIR:AT1G28280 | RefSeq:AT1G28280-TAIR-G | EnsemblPlants:AT1G28280.1 |
| TAIR:AT1G28280.1 | EMBL:AY086070 | Unigene:At.16033 | EMBL:BT020398 | EMBL:BT020477 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043433 | GO:GO:0051245 | RefSeq:NP_564303.2 | ProteinID:OAP12831.1 | PFAM:PF05678 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR33402 | PANTHER:PTHR33402:SF7 | UniProt:Q5M750 | UniParc:UPI0000196EF5 | InterPro:VQ | SEG:seg |
Description
VQ4VQ motif-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q5M750]
Coordinates
chr1:-:9886077..9887478
Molecular Weight (calculated)
26864.5 Da
IEP (calculated)
10.380
GRAVY (calculated)
-0.765
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSPRYREA TNLIPSPRCH NSNNSCGMSS SSESNKPPTT PTRHVTTRSE SGNPYPTTFV QADTSSFKQV VQMLTGSAER PKHGSSLKPN PTHHQPDPRS
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSG SSSASTS
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSG SSSASTS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.