CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030082.1-P	Field mustard	nucleus, plastid	93.15	94.67
CDY15683	Canola	nucleus, plastid	93.15	94.67
AT1G28280.1	Thale cress	nucleus, plastid	75.81	76.11
CDY35728	Canola	nucleus, plastid	70.56	75.11
CDX90141	Canola	nucleus, plastid	61.69	67.4
VIT_00s0527g00020.t01	Wine grape	cytosol, nucleus, plastid	43.55	65.85
CDY37691	Canola	plastid	45.56	56.78
KRH10893	Soybean	nucleus	41.94	52.26
KRH04611	Soybean	plastid	26.61	50.77
PGSC0003DMT400076377	Potato	nucleus	52.82	50.0
Solyc02g078030.1.1	Tomato	nucleus, plastid	52.02	49.05
KRH37938	Soybean	mitochondrion	25.4	48.09
KRH20439	Soybean	nucleus, plastid	52.42	46.26
CDX96246	Canola	nucleus	39.52	46.23
CDX97648	Canola	plastid	41.13	45.95
CDY20126	Canola	nucleus, plastid	39.11	44.91
CDY32307	Canola	nucleus	39.92	44.59
GSMUA_Achr4P10440_001	Banana	nucleus	37.1	43.6
GSMUA_Achr8P27670_001	Banana	plastid	18.95	43.12
GSMUA_AchrUn_...	Banana	nucleus	43.15	42.29
CDY65903	Canola	nucleus	35.89	41.78
TraesCS1A01G338700.1	Wheat	plastid	40.32	41.67
Zm00001d010759_P001	Maize	plastid	36.69	41.36
TraesCS1B01G351200.1	Wheat	plastid	39.11	40.93
GSMUA_AchrUn_...	Banana	nucleus	40.32	40.82
Zm00001d038810_P001	Maize	plastid	35.48	40.55
CDX96247	Canola	nucleus	39.52	40.5
KRH21417	Soybean	nucleus	42.34	40.38
CDX98545	Canola	plastid	31.85	40.31
Os01t0747800-01	Rice	nucleus	37.5	40.26
HORVU3Hr1G026840.1	Barley	plastid	34.27	40.09
TraesCS1D01G340900.1	Wheat	plastid	38.71	39.67
Os01t0201250-00	Rice	plastid	33.87	39.62
TraesCS3D01G140600.1	Wheat	plastid	33.47	39.52
TraesCS3B01G158200.1	Wheat	plastid	33.47	39.52
TraesCS3A01G313700.1	Wheat	plastid	33.47	39.52
GSMUA_Achr7P13760_001	Banana	nucleus	39.52	39.52
CDY14349	Canola	nucleus	38.71	39.51
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	37.9	39.5
GSMUA_Achr4P02580_001	Banana	nucleus	41.13	39.38
GSMUA_Achr9P05800_001	Banana	nucleus	39.92	38.67
TraesCS3B01G307300.1	Wheat	nucleus, plastid	35.89	38.53
CDY17201	Canola	plastid	31.05	38.5
EES03601	Sorghum	nucleus, plastid	36.69	38.4
EES00109	Sorghum	cytosol, nucleus, plasma membrane, plastid	33.87	38.36
Zm00001d008878_P001	Maize	cytosol	32.66	38.21
KRH50064	Soybean	nucleus, plastid	47.58	38.06
CDY27942	Canola	nucleus	30.65	38.0
TraesCS3D01G272900.1	Wheat	nucleus, plastid	36.29	37.82
TraesCS3A01G273600.1	Wheat	nucleus, plastid	36.29	37.82
Zm00001d043450_P001	Maize	nucleus, plastid	37.5	37.05
EES18519	Sorghum	plastid	37.5	36.76
Zm00001d039428_P001	Maize	plastid	31.85	36.74
CDX69949	Canola	plastid	22.18	36.67
CDY40742	Canola	nucleus	20.56	36.43
Os05t0519000-00	Rice	plastid	39.52	36.3
HORVU1Hr1G076390.1	Barley	plastid	38.31	34.67
CDX67947	Canola	nucleus	22.58	34.15
CDX79386	Canola	plastid	22.98	33.14
CDY37597	Canola	nucleus	21.77	32.93
CDY39978	Canola	nucleus	21.77	32.34
CDX87310	Canola	nucleus	21.37	31.74
HORVU3Hr1G071320.1	Barley	plastid	35.48	29.83
CDY62120	Canola	mitochondrion, nucleus	23.39	29.29
CDY38669	Canola	nucleus	21.37	27.32
CDX81107	Canola	nucleus	21.77	25.35
CDY60233	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	22.98	23.85

Protein Annotations

EnsemblPlants:CDX94599	EnsemblPlantsGene:GSBRNA2T00157891001	InterPro:VQ	PANTHER:PTHR33402	PANTHER:PTHR33402:SF7	PFAM:PF05678
ProteinID:CDX94599	ProteinID:CDX94599.1	SEG:seg	UniParc:UPI0004EEEF6C	MapMan:35.1	:

Description

BnaC07g10590D

Coordinates

chrLK031883:-:108344..110620

Molecular Weight (calculated)

27221.6 Da

IEP (calculated)

10.108

GRAVY (calculated)

-0.885

Length

248 amino acids

Sequence
(BLAST)

001: MERYRDASTN LIPSPRCHNN NNSCSMSSST ESNNNNNNKP PTTPTRQVTT RSESGNPYPT TFVQADTCSF KQVVQMLTGS SDRPKQHNTS SLKPNPTHQT
101: DPRSSPSQFP IPPIKAVNKK QSSSSSSGFR LYERRNSMKN LKINPLNPVF NPVNSAFSPR KPEILSPSIL DFPSLVLSPV TPLIPDPFNR SGSSSQSPDD
201: AEEKAMKERG FYLHPSPATT PMDSEPRLLP LFPLTSPRVS GSSTDSSS

Best Arabidopsis Sequence Match ( AT1G28280.2 )
(BLAST)

001: MENSPRYREA TNLIPSPRCH NSNNSCGMSS SSESNKPPTT PTRHVTTRSE SGNPYPTTFV QADTSSFKQV VQMLTGSAER PKHGSSLKPN PTHHQPDPRS
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSV NKR

Arabidopsis Description

VQ4VQ motif-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q5M750]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.