Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P02580_001 | Banana | nucleus | 58.59 | 57.92 |
| GSMUA_Achr8P27670_001 | Banana | plastid | 24.61 | 57.8 |
| GSMUA_Achr7P13760_001 | Banana | nucleus | 52.73 | 54.44 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 47.27 | 50.84 |
| VIT_19s0014g02490.t01 | Wine grape | nucleus, plastid | 40.62 | 49.52 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.88 | 48.98 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.27 | 47.83 |
| PGSC0003DMT400097260 | Potato | nucleus, plastid | 41.8 | 46.52 |
| GSMUA_Achr4P10440_001 | Banana | nucleus | 38.28 | 46.45 |
| Solyc07g063070.1.1 | Tomato | nucleus, plastid | 41.8 | 45.92 |
| VIT_00s0527g00020.t01 | Wine grape | cytosol, nucleus, plastid | 29.3 | 45.73 |
| KRH10893 | Soybean | nucleus | 35.16 | 45.23 |
| Bra010885.1-P | Field mustard | nucleus, plastid | 28.12 | 44.44 |
| CDY37691 | Canola | plastid | 33.98 | 43.72 |
| CDX90141 | Canola | nucleus, plastid | 38.67 | 43.61 |
| CDY35728 | Canola | nucleus, plastid | 39.45 | 43.35 |
| KRH27258 | Soybean | nucleus, plastid | 41.41 | 43.09 |
| AT1G28280.1 | Thale cress | nucleus, plastid | 40.23 | 41.7 |
| Bra021096.1-P | Field mustard | nucleus, plastid | 35.16 | 41.67 |
| CDX97648 | Canola | plastid | 35.94 | 41.44 |
| KRH55250 | Soybean | nucleus, plastid | 39.45 | 41.39 |
| KRH22072 | Soybean | nucleus, plastid | 40.23 | 41.37 |
| KRH26132 | Soybean | nucleus, plastid | 39.84 | 41.13 |
| AT3G15300.1 | Thale cress | nucleus, plastid | 35.16 | 41.1 |
| CDY15683 | Canola | nucleus, plastid | 39.06 | 40.98 |
| Bra030082.1-P | Field mustard | nucleus, plastid | 39.06 | 40.98 |
| Bra027262.1-P | Field mustard | plastid | 35.94 | 40.89 |
| CDY20126 | Canola | nucleus, plastid | 34.38 | 40.74 |
| CDX96246 | Canola | nucleus | 33.2 | 40.09 |
| CDY32307 | Canola | nucleus | 34.77 | 40.09 |
| KRH38333 | Soybean | plastid | 31.25 | 40.0 |
| CDX94599 | Canola | nucleus, plastid | 38.67 | 39.92 |
| Solyc02g078030.1.1 | Tomato | nucleus, plastid | 40.62 | 39.54 |
| CDY65903 | Canola | nucleus | 32.42 | 38.97 |
| Bra003032.1-P | Field mustard | nucleus | 34.38 | 38.77 |
| PGSC0003DMT400076377 | Potato | nucleus | 39.45 | 38.55 |
| CDX98545 | Canola | plastid | 28.52 | 37.24 |
| Bra022675.1-P | Field mustard | nucleus | 34.38 | 36.51 |
| CDX96247 | Canola | nucleus | 34.38 | 36.36 |
| CDY14349 | Canola | nucleus | 34.38 | 36.21 |
| KRH21417 | Soybean | nucleus | 36.72 | 36.15 |
| KRH37938 | Soybean | mitochondrion | 18.36 | 35.88 |
| AT2G33780.1 | Thale cress | nucleus | 28.52 | 35.78 |
| AT5G53830.1 | Thale cress | nucleus | 33.2 | 34.98 |
| KRH04611 | Soybean | plastid | 17.58 | 34.62 |
| KRH50064 | Soybean | nucleus, plastid | 39.45 | 32.58 |
| KRH20439 | Soybean | nucleus, plastid | 35.55 | 32.38 |
| Bra005472.1-P | Field mustard | mitochondrion, plastid | 22.27 | 30.98 |
| CDY17201 | Canola | plastid | 23.44 | 30.0 |
| CDY27942 | Canola | nucleus | 22.66 | 29.0 |
| GSMUA_Achr3P19850_001 | Banana | nucleus | 21.09 | 26.21 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P05800_001 | EnsemblPlants:GSMUA_Achr9T05800_001 | EnsemblPlantsGene:GSMUA_Achr9G05800_001 | InterPro:VQ | PANTHER:PTHR33402 | PANTHER:PTHR33402:SF9 |
| PFAM:PF05678 | SEG:seg | UniParc:UPI000295A259 | UniProt:M0TXT9 | MapMan:35.1 | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G05800_001]
Coordinates
chr9:+:3694390..3695404
Molecular Weight (calculated)
26751.6 Da
IEP (calculated)
10.691
GRAVY (calculated)
-0.397
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MENLHHGFHE NEQQSSHPTS PYSNSSSNNG SSSSSNGVTA AAAAAACSPT PLTPQSLPKS VDTNSFPTTF IQADASSFKQ VVQMLTGSVA RAAKHAGATA
101: APPTKNLVSP AAKATGPKKP TFKLHERRGS LKNLKMISPM IPGFVKSDPS SPMGVAFFSR RQPEILSPSM LDLPSLNLSP VTPLIPDPFN RTPQPSPAAA
201: TGATMSAEDR AIAERGFYFH PSPKTTPRGS EPPRLLPLFP VTSPRPSSAS AAGTSI
101: APPTKNLVSP AAKATGPKKP TFKLHERRGS LKNLKMISPM IPGFVKSDPS SPMGVAFFSR RQPEILSPSM LDLPSLNLSP VTPLIPDPFN RTPQPSPAAA
201: TGATMSAEDR AIAERGFYFH PSPKTTPRGS EPPRLLPLFP VTSPRPSSAS AAGTSI
001: MENSPRYREA TNLIPSPRCH NSNNSCGMSS SSESNKPPTT PTRHVTTRSE SGNPYPTTFV QADTSSFKQV VQMLTGSAER PKHGSSLKPN PTHHQPDPRS
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSG SSSASTS
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSG SSSASTS
Arabidopsis Description
VQ4VQ motif-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q5M750]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.