CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22072	Soybean	nucleus, plastid	83.74	82.73
KRH38333	Soybean	plastid	62.6	77.0
VIT_19s0014g02490.t01	Wine grape	nucleus, plastid	59.35	69.52
KRH55250	Soybean	nucleus, plastid	67.48	68.03
Solyc07g063070.1.1	Tomato	nucleus, plastid	63.82	67.38
PGSC0003DMT400097260	Potato	nucleus, plastid	62.2	66.52
KRH26132	Soybean	nucleus, plastid	66.67	66.13
AT3G15300.1	Thale cress	nucleus, plastid	51.22	57.53
Bra021096.1-P	Field mustard	nucleus, plastid	50.41	57.41
CDX97648	Canola	plastid	51.22	56.76
Bra027262.1-P	Field mustard	plastid	51.22	56.0
CDY20126	Canola	nucleus, plastid	48.78	55.56
CDY32307	Canola	nucleus	49.59	54.95
CDX96246	Canola	nucleus	46.75	54.25
Bra022675.1-P	Field mustard	nucleus	51.22	52.28
Bra003032.1-P	Field mustard	nucleus	47.97	51.98
CDY65903	Canola	nucleus	43.9	50.7
CDX98545	Canola	plastid	40.24	50.51
GSMUA_Achr8P27670_001	Banana	plastid	22.36	50.46
CDY14349	Canola	nucleus	49.19	49.79
CDX96247	Canola	nucleus	48.78	49.59
AT5G53830.1	Thale cress	nucleus	48.78	49.38
KRH10893	Soybean	nucleus	39.84	49.25
GSMUA_AchrUn_...	Banana	nucleus	48.37	48.57
GSMUA_Achr7P13760_001	Banana	nucleus	46.75	46.37
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	44.72	46.22
GSMUA_Achr4P02580_001	Banana	nucleus	48.37	45.95
EES03601	Sorghum	nucleus, plastid	43.9	45.57
TraesCS3B01G158200.1	Wheat	plastid	38.62	45.24
TraesCS3D01G140600.1	Wheat	plastid	38.62	45.24
GSMUA_Achr4P10440_001	Banana	nucleus	38.62	45.02
TraesCS3A01G313700.1	Wheat	plastid	38.21	44.76
HORVU3Hr1G026840.1	Barley	plastid	38.21	44.34
Os01t0747800-01	Rice	nucleus	41.46	44.16
Os01t0201250-00	Rice	plastid	37.8	43.87
Os05t0519000-00	Rice	plastid	47.97	43.7
TraesCS1B01G351200.1	Wheat	plastid	41.87	43.46
TraesCS3A01G273600.1	Wheat	nucleus, plastid	41.87	43.28
TraesCS3D01G272900.1	Wheat	nucleus, plastid	41.46	42.86
TraesCS1D01G340900.1	Wheat	plastid	41.87	42.56
EES00109	Sorghum	cytosol, nucleus, plasma membrane, plastid	37.8	42.47
Zm00001d008878_P001	Maize	cytosol	36.59	42.45
TraesCS1A01G338700.1	Wheat	plastid	41.06	42.08
TraesCS3B01G307300.1	Wheat	nucleus, plastid	39.43	41.99
GSMUA_Achr9P05800_001	Banana	nucleus	43.09	41.41
Zm00001d010759_P001	Maize	plastid	36.99	41.36
GSMUA_AchrUn_...	Banana	nucleus	42.28	41.11
Zm00001d039428_P001	Maize	plastid	35.77	40.93
Zm00001d043450_P001	Maize	nucleus, plastid	41.46	40.64
Zm00001d038810_P001	Maize	plastid	35.77	40.55
EES18519	Sorghum	plastid	41.06	39.92
KRH37938	Soybean	mitochondrion	21.14	39.69
KRH21417	Soybean	nucleus	41.46	39.23
KRH20439	Soybean	nucleus, plastid	44.31	38.79
HORVU1Hr1G076390.1	Barley	plastid	43.09	38.69
KRH04611	Soybean	plastid	19.92	37.69
HORVU3Hr1G071320.1	Barley	plastid	43.09	35.93
KRH47420	Soybean	plastid	27.24	34.72
KRH50064	Soybean	nucleus, plastid	43.5	34.52
KRH44484	Soybean	plastid	26.02	32.99
KRH41023	Soybean	nucleus	22.76	32.18
KRH59700	Soybean	nucleus	22.76	30.11

Protein Annotations

EMBL:ACUP02007791	EnsemblPlants:KRH27258	EnsemblPlantsGene:GLYMA_12G225200	EntrezGene:100527689	InterPro:VQ	PANTHER:PTHR33402
PANTHER:PTHR33402:SF6	PFAM:PF05678	ProteinID:KRH27258	ProteinID:KRH27258.1	SEG:seg	UniParc:UPI000233CA3D
UniProt:I1LV17	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:38479959..38482769

Molecular Weight (calculated)

27185.6 Da

IEP (calculated)

7.891

GRAVY (calculated)

-0.891

Length

246 amino acids

Sequence
(BLAST)

001: MEISSRLQER ENHSHNHNHH HNHNLPSPMN SPTSNVSNCM SSSNSNGIQI PTPPLTPKTI PRSDSNPYPT TFVQADTSTF KQVVQMLTGS SDTTKQASQD
101: PPPSSRNFNI PPIKTPPKKQ QGFKLYERRN NSLKNSLMLN TLMPNFAHNH NNNNSPSFSP RNMPEILSPS LLDFPSLALS PVTPLNDDPF DKSSPSLGNS
201: SEEDKAIAEK GFYLHPSPMT TPRDSEPQLL PLFPVTSPRV SSESPS

Best Arabidopsis Sequence Match ( AT3G15300.1 )
(BLAST)

001: MEISTNPPSS SSSSVSSSII NGSLHHHIIT RSDHYPTTFV QADSSSFKQV VQMLTGSSSP RSPDSPRPPT TPSGKGNFVI PPIKTAQPKK HSGNKLYERR
101: SHGGFNNNLK NSLMINTLMI GGGGAGSPRF SPRNQEILSP SCLDFPKLAL NSPVTPLKQG TNGNEGDPFD KMSPLSEEER GIADKGYYLH RSPISTPRDS
201: EPQLLPLFPV TSPRLSPEM

Arabidopsis Description

VQ19VQ motif-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDZ1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.