Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P27670_001 | Banana | plastid | 24.17 | 46.79 |
| KRH10893 | Soybean | nucleus | 42.18 | 44.72 |
| VIT_00s0527g00020.t01 | Wine grape | cytosol, nucleus, plastid | 34.12 | 43.9 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.61 | 43.87 |
| VIT_19s0014g02490.t01 | Wine grape | nucleus, plastid | 43.6 | 43.81 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 48.82 | 43.28 |
| Bra010885.1-P | Field mustard | nucleus, plastid | 33.18 | 43.21 |
| GSMUA_AchrUn_... | Banana | nucleus | 49.29 | 42.45 |
| Zm00001d010759_P001 | Maize | plastid | 44.08 | 42.27 |
| TraesCS1D01G340900.1 | Wheat | plastid | 47.87 | 41.74 |
| CDY37691 | Canola | plastid | 39.34 | 41.71 |
| TraesCS3B01G307300.1 | Wheat | nucleus, plastid | 45.5 | 41.56 |
| Os01t0747800-01 | Rice | nucleus | 45.5 | 41.56 |
| EES03601 | Sorghum | nucleus, plastid | 46.45 | 41.35 |
| GSMUA_Achr4P02580_001 | Banana | nucleus | 50.71 | 41.31 |
| Zm00001d038810_P001 | Maize | plastid | 42.18 | 41.01 |
| CDY35728 | Canola | nucleus, plastid | 45.02 | 40.77 |
| GSMUA_Achr7P13760_001 | Banana | nucleus | 47.87 | 40.73 |
| CDX90141 | Canola | nucleus, plastid | 43.6 | 40.53 |
| TraesCS1B01G351200.1 | Wheat | plastid | 45.5 | 40.51 |
| TraesCS1A01G338700.1 | Wheat | plastid | 45.5 | 40.0 |
| Solyc07g063070.1.1 | Tomato | nucleus, plastid | 44.08 | 39.91 |
| TraesCS3A01G273600.1 | Wheat | nucleus, plastid | 44.55 | 39.5 |
| TraesCS3D01G272900.1 | Wheat | nucleus, plastid | 44.55 | 39.5 |
| AT1G28280.1 | Thale cress | nucleus, plastid | 45.97 | 39.27 |
| PGSC0003DMT400097260 | Potato | nucleus, plastid | 42.65 | 39.13 |
| KRH27258 | Soybean | nucleus, plastid | 45.02 | 38.62 |
| CDY20126 | Canola | nucleus, plastid | 39.34 | 38.43 |
| Bra021096.1-P | Field mustard | nucleus, plastid | 39.34 | 38.43 |
| CDX97648 | Canola | plastid | 40.28 | 38.29 |
| GSMUA_Achr9P05800_001 | Banana | nucleus | 46.45 | 38.28 |
| KRH22072 | Soybean | nucleus, plastid | 45.02 | 38.15 |
| KRH55250 | Soybean | nucleus, plastid | 44.08 | 38.11 |
| CDY15683 | Canola | nucleus, plastid | 44.08 | 38.11 |
| Bra030082.1-P | Field mustard | nucleus, plastid | 44.08 | 38.11 |
| Zm00001d043450_P001 | Maize | nucleus, plastid | 45.02 | 37.85 |
| CDX96246 | Canola | nucleus | 37.91 | 37.74 |
| Bra027262.1-P | Field mustard | plastid | 39.81 | 37.33 |
| CDX94599 | Canola | nucleus, plastid | 43.6 | 37.1 |
| KRH38333 | Soybean | plastid | 35.07 | 37.0 |
| AT3G15300.1 | Thale cress | nucleus, plastid | 38.39 | 36.99 |
| AT2G33780.1 | Thale cress | nucleus | 35.55 | 36.76 |
| EES18519 | Sorghum | plastid | 44.08 | 36.76 |
| KRH26132 | Soybean | nucleus, plastid | 43.13 | 36.69 |
| KRH37938 | Soybean | mitochondrion | 22.75 | 36.64 |
| Solyc02g078030.1.1 | Tomato | nucleus, plastid | 45.5 | 36.5 |
| CDY32307 | Canola | nucleus | 38.39 | 36.49 |
| PGSC0003DMT400076377 | Potato | nucleus | 45.02 | 36.26 |
| HORVU1Hr1G076390.1 | Barley | plastid | 46.45 | 35.77 |
| CDY65903 | Canola | nucleus | 35.07 | 34.74 |
| KRH04611 | Soybean | plastid | 21.33 | 34.62 |
| Os05t0519000-00 | Rice | plastid | 44.08 | 34.44 |
| Bra003032.1-P | Field mustard | nucleus | 36.97 | 34.36 |
| CDX98545 | Canola | plastid | 31.75 | 34.18 |
| Bra022675.1-P | Field mustard | nucleus | 38.86 | 34.02 |
| Bra005472.1-P | Field mustard | mitochondrion, plastid | 29.38 | 33.7 |
| CDX96247 | Canola | nucleus | 38.39 | 33.47 |
| AT5G53830.1 | Thale cress | nucleus | 37.91 | 32.92 |
| HORVU3Hr1G071320.1 | Barley | plastid | 45.97 | 32.88 |
| CDY14349 | Canola | nucleus | 37.44 | 32.51 |
| CDY27942 | Canola | nucleus | 30.81 | 32.5 |
| CDY17201 | Canola | plastid | 30.81 | 32.5 |
| KRH21417 | Soybean | nucleus | 39.81 | 32.31 |
| KRH20439 | Soybean | nucleus, plastid | 42.65 | 32.03 |
| KRH50064 | Soybean | nucleus, plastid | 43.6 | 29.68 |
| GSMUA_Achr3P19850_001 | Banana | nucleus | 25.12 | 25.73 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P10440_001 | EnsemblPlants:GSMUA_Achr4T10440_001 | EnsemblPlantsGene:GSMUA_Achr4G10440_001 | InterPro:VQ | PANTHER:PTHR33402 | PANTHER:PTHR33402:SF9 |
| PFAM:PF05678 | SEG:seg | UniParc:UPI000294DC81 | UniProt:M0SMR1 | MapMan:35.1 | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G10440_001]
Coordinates
chr4:+:7571839..7572474
Molecular Weight (calculated)
22454.8 Da
IEP (calculated)
10.513
GRAVY (calculated)
-0.435
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MENHPIQSPH PIAPHSTTSS RCISNDDGVT AAAAPPTPPP PPKSTPCATT FVQADTSSFK QVVQLLTGSA ETTAKRCGGL PPAAKAVTGP KRRAFKLYER
101: RSNLKTIGPL KSTAFSPHKR PPEIKSPIVL DFPSLTLSPV TPLTPDPFDR LLQPYSAARM SADARSIAEK GFYLHPSPRT TPRDAEPPRL LPLFPISSPR
201: TSSASAACSS T
101: RSNLKTIGPL KSTAFSPHKR PPEIKSPIVL DFPSLTLSPV TPLTPDPFDR LLQPYSAARM SADARSIAEK GFYLHPSPRT TPRDAEPPRL LPLFPISSPR
201: TSSASAACSS T
001: MEISTNPPSS SSSSVSSSII NGSLHHHIIT RSDHYPTTFV QADSSSFKQV VQMLTGSSSP RSPDSPRPPT TPSGKGNFVI PPIKTAQPKK HSGNKLYERR
101: SHGGFNNNLK NSLMINTLMI GGGGAGSPRF SPRNQEILSP SCLDFPKLAL NSPVTPLKQG TNGNEGDPFD KMSPLSEEER GIADKGYYLH RSPISTPRDS
201: EPQLLPLFPV TSPRLSPEM
101: SHGGFNNNLK NSLMINTLMI GGGGAGSPRF SPRNQEILSP SCLDFPKLAL NSPVTPLKQG TNGNEGDPFD KMSPLSEEER GIADKGYYLH RSPISTPRDS
201: EPQLLPLFPV TSPRLSPEM
Arabidopsis Description
VQ19VQ motif-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDZ1]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.