CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90141	Canola	nucleus, plastid	76.82	78.85
Bra010885.1-P	Field mustard	nucleus, plastid	54.08	77.78
AT1G28280.1	Thale cress	nucleus, plastid	77.25	72.87
CDY15683	Canola	nucleus, plastid	75.11	71.72
CDX94599	Canola	nucleus, plastid	75.11	70.56
CDY37691	Canola	plastid	53.65	62.81
VIT_00s0527g00020.t01	Wine grape	cytosol, nucleus, plastid	42.92	60.98
KRH10893	Soybean	nucleus	45.06	52.76
KRH04611	Soybean	plastid	27.9	50.0
PGSC0003DMT400076377	Potato	nucleus	54.51	48.47
KRH37938	Soybean	mitochondrion	26.61	47.33
CDX96246	Canola	nucleus	42.92	47.17
Solyc02g078030.1.1	Tomato	nucleus, plastid	53.22	47.15
CDY20126	Canola	nucleus, plastid	42.06	45.37
GSMUA_Achr4P10440_001	Banana	nucleus	40.77	45.02
CDY32307	Canola	nucleus	42.49	44.59
CDX97648	Canola	plastid	42.06	44.14
KRH20439	Soybean	nucleus, plastid	53.22	44.13
Os01t0747800-01	Rice	nucleus	43.35	43.72
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	44.21	43.28
GSMUA_Achr8P27670_001	Banana	plastid	20.17	43.12
Zm00001d038810_P001	Maize	plastid	39.91	42.86
Zm00001d010759_P001	Maize	plastid	40.34	42.73
CDY65903	Canola	nucleus	39.06	42.72
EES03601	Sorghum	nucleus, plastid	43.35	42.62
HORVU3Hr1G026840.1	Barley	plastid	38.63	42.45
TraesCS3A01G313700.1	Wheat	plastid	38.2	42.38
TraesCS1A01G338700.1	Wheat	plastid	43.35	42.08
TraesCS3D01G140600.1	Wheat	plastid	37.77	41.9
TraesCS3B01G158200.1	Wheat	plastid	37.77	41.9
GSMUA_AchrUn_...	Banana	nucleus	45.49	41.9
TraesCS1B01G351200.1	Wheat	plastid	42.49	41.77
CDX96247	Canola	nucleus	43.35	41.74
GSMUA_AchrUn_...	Banana	nucleus	43.78	41.63
GSMUA_Achr7P13760_001	Banana	nucleus	44.21	41.53
CDY17201	Canola	plastid	35.62	41.5
CDY27942	Canola	nucleus	35.62	41.5
KRH21417	Soybean	nucleus	45.92	41.15
TraesCS1D01G340900.1	Wheat	plastid	42.49	40.91
CDY14349	Canola	nucleus	42.49	40.74
TraesCS3B01G307300.1	Wheat	nucleus, plastid	40.34	40.69
GSMUA_Achr4P02580_001	Banana	nucleus	45.06	40.54
CDX98545	Canola	plastid	33.91	40.31
Zm00001d039428_P001	Maize	plastid	36.91	40.0
TraesCS3D01G272900.1	Wheat	nucleus, plastid	40.77	39.92
TraesCS3A01G273600.1	Wheat	nucleus, plastid	40.77	39.92
Zm00001d008878_P001	Maize	cytosol	36.05	39.62
Os01t0201250-00	Rice	plastid	36.05	39.62
GSMUA_Achr9P05800_001	Banana	nucleus	43.35	39.45
Zm00001d043450_P001	Maize	nucleus, plastid	42.49	39.44
Os05t0519000-00	Rice	plastid	45.49	39.26
EES00109	Sorghum	cytosol, nucleus, plasma membrane, plastid	36.48	38.81
CDX69949	Canola	plastid	24.89	38.67
EES18519	Sorghum	plastid	41.63	38.34
KRH50064	Soybean	nucleus, plastid	49.36	37.1
HORVU1Hr1G076390.1	Barley	plastid	42.92	36.5
CDY40742	Canola	nucleus	21.89	36.43
CDX67947	Canola	nucleus	24.46	34.76
CDY37597	Canola	nucleus	24.03	34.15
HORVU3Hr1G071320.1	Barley	plastid	42.92	33.9
CDX79386	Canola	plastid	24.89	33.72
CDY39978	Canola	nucleus	23.18	32.34
CDX87310	Canola	nucleus	22.75	31.74
CDY62120	Canola	mitochondrion, nucleus	24.89	29.29
CDY38669	Canola	nucleus	24.03	28.87
CDX81107	Canola	nucleus	24.03	26.29
CDY60233	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	24.03	23.43

Protein Annotations

EnsemblPlants:CDY35728	EnsemblPlantsGene:GSBRNA2T00059155001	InterPro:VQ	PANTHER:PTHR33402	PANTHER:PTHR33402:SF7	PFAM:PF05678
ProteinID:CDY35728	ProteinID:CDY35728.1	SEG:seg	UniParc:UPI0004EAD191	UniProt:A0A078HFY3	MapMan:35.1

Description

BnaC03g58490DBnaC03g58490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFY3]

Coordinates

chrLK032359:-:81597..82556

Molecular Weight (calculated)

25541.9 Da

IEP (calculated)

10.574

GRAVY (calculated)

-0.853

Length

233 amino acids

Sequence
(BLAST)

001: MENSPRYRDA STNPNPSPRC SSSSTESNKP PITPTRNLTP RSESGNPYPT TFVQADTTSF KQVVQMLTGS SDRPKHHNNN NTSSLKPDPR SSSPSQFSIP
101: PIKAVPNKKQ SSGFRLYERR NSMKNLKINP LNPVFNPVNS AFSPRKPEIL SPSILDFPSL VLSPVTPLVP DPFNRSGSSN RSPDDVEEKA MKEKGFYLHP
201: SPAPATTPMD QEPRLLPLFP VTSPRVSGSS TAS

Best Arabidopsis Sequence Match ( AT1G28280.1 )
(BLAST)

001: MENSPRYREA TNLIPSPRCH NSNNSCGMSS SSESNKPPTT PTRHVTTRSE SGNPYPTTFV QADTSSFKQV VQMLTGSAER PKHGSSLKPN PTHHQPDPRS
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSG SSSASTS

Arabidopsis Description

VQ4VQ motif-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q5M750]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.