Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69949 | Canola | plastid | 45.54 | 64.67 |
| CDY60233 | Canola | cytosol, endoplasmic reticulum, plasma membrane, plastid | 70.42 | 62.76 |
| Bra005995.1-P | Field mustard | cytosol, nucleus, plastid | 48.36 | 59.2 |
| AT5G08480.2 | Thale cress | cytosol, plastid | 40.85 | 50.29 |
| CDY62120 | Canola | mitochondrion, nucleus | 44.13 | 47.47 |
| CDY40742 | Canola | nucleus | 26.76 | 40.71 |
| KRH59700 | Soybean | nucleus | 33.33 | 38.17 |
| KRH41023 | Soybean | nucleus | 30.99 | 37.93 |
| PGSC0003DMT400030219 | Potato | cytosol | 23.47 | 34.25 |
| Solyc12g088490.1.1 | Tomato | cytosol | 25.35 | 33.33 |
| CDY37691 | Canola | plastid | 26.76 | 28.64 |
| CDY65903 | Canola | nucleus | 27.7 | 27.7 |
| CDX96246 | Canola | nucleus | 27.23 | 27.36 |
| CDX97648 | Canola | plastid | 27.7 | 26.58 |
| CDY20126 | Canola | nucleus, plastid | 25.82 | 25.46 |
| CDX87310 | Canola | nucleus | 19.72 | 25.15 |
| CDY39978 | Canola | nucleus | 19.72 | 25.15 |
| CDY32307 | Canola | nucleus | 25.82 | 24.77 |
| CDX79386 | Canola | plastid | 19.72 | 24.42 |
| CDY14349 | Canola | nucleus | 27.7 | 24.28 |
| CDX90141 | Canola | nucleus, plastid | 25.82 | 24.23 |
| CDY35728 | Canola | nucleus, plastid | 26.29 | 24.03 |
| CDX67947 | Canola | nucleus | 18.31 | 23.78 |
| CDX96247 | Canola | nucleus | 26.76 | 23.55 |
| CDY17201 | Canola | plastid | 22.07 | 23.5 |
| CDY37597 | Canola | nucleus | 17.37 | 22.56 |
| CDY27942 | Canola | nucleus | 20.66 | 22.0 |
| CDX94599 | Canola | nucleus, plastid | 25.35 | 21.77 |
| CDY15683 | Canola | nucleus, plastid | 24.88 | 21.72 |
| CDY38669 | Canola | nucleus | 17.84 | 19.59 |
| CDX98545 | Canola | plastid | 17.37 | 18.88 |
Protein Annotations
| EnsemblPlants:CDX81107 | EnsemblPlantsGene:GSBRNA2T00134553001 | InterPro:VQ | PANTHER:PTHR33402 | PANTHER:PTHR33402:SF2 | PFAM:PF05678 |
| ProteinID:CDX81107 | ProteinID:CDX81107.1 | SEG:seg | UniParc:UPI0004EDCE63 | MapMan:35.1 | : |
Description
BnaC03g03610D
Coordinates
chrLK031823:+:1753351..1754937
Molecular Weight (calculated)
24169.1 Da
IEP (calculated)
10.202
GRAVY (calculated)
-0.668
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSVKYLITF NRDSSCKKEE KSKTVCLVLW FRERLLIHIH LLPLASSFRG PKKQTQVYIK ACSVREKNLQ MNNQGSQNVA TCKPVTTFVH TDTDTFREVV
101: QRLTGPSESN AAAIPEATVI KTAIQRKPTS KLHERRQCMR PKLEIVKPPL SFKPTEGDKA DPDSCTTNNE EEERAIKERR FYLHPSPRSK PGYTEPALLT
201: LFPLTSPNSS GRP
101: QRLTGPSESN AAAIPEATVI KTAIQRKPTS KLHERRQCMR PKLEIVKPPL SFKPTEGDKA DPDSCTTNNE EEERAIKERR FYLHPSPRSK PGYTEPALLT
201: LFPLTSPNSS GRP
001: MNSKGSQNVA TTCKPVTTFV QTDTNTFREI VQRLTGPTEN NAAAATPEAT VIKTAIQKRP TSKLHERRQC MRPKLEIVKP PLSFKPTEGE PDSCTTNIEE
101: EEKAIKERRF YLHPSPRSKP GYTEPELLTL FPLTSPNSSG KP
101: EEKAIKERRF YLHPSPRSKP GYTEPELLTL FPLTSPNSSG KP
Arabidopsis Description
VQ31VQ motif-containing protein 31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP0]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.