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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc12g088490.1.1 Tomato cytosol 65.07 58.64
CDX69949 Canola plastid 36.99 36.0
KRH41023 Soybean nucleus 41.1 34.48
CDY40742 Canola nucleus 32.88 34.29
AT5G08480.2 Thale cress cytosol, plastid 40.41 34.1
KRH59700 Soybean nucleus 43.15 33.87
PGSC0003DMT400036669 Potato nucleus, plastid 38.36 33.73
Bra005995.1-P Field mustard cytosol, nucleus, plastid 37.67 31.61
Bra009343.1-P Field mustard cytosol, plastid 21.92 31.37
CDY62120 Canola mitochondrion, nucleus 39.73 29.29
PGSC0003DMT400073731 Potato plastid 32.88 29.09
PGSC0003DMT400097260 Potato nucleus, plastid 39.04 24.78
CDX81107 Canola nucleus 34.25 23.47
CDY60233 Canola cytosol, endoplasmic reticulum, plasma membrane, plastid 34.93 21.34
PGSC0003DMT400076377 Potato nucleus 36.99 20.61
Protein Annotations
EnsemblPlants:PGSC0003DMT400030219EnsemblPlantsGene:PGSC0003DMG400011562EntrezGene:102586675InterPro:VQPANTHER:PTHR33402PANTHER:PTHR33402:SF2
PFAM:PF05678PGSC:PGSC0003DMG400011562RefSeq:XP_006342654.1UniParc:UPI0002957B3EUniProt:M1ATW7MapMan:35.2
Description
VQ motif-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011562]
Coordinates
chr12:-:56317475..56317915
Molecular Weight (calculated)
16644.0 Da
IEP (calculated)
10.074
GRAVY (calculated)
-0.682
Length
146 amino acids
Sequence
(BLAST)
001: MEMTTIHTGL SKDMTTFVQA DLSCFREVVQ RLTGTSECSD VNPKIAATTN ISKAQKQPNI SKLHHRRQCR RPDIEITNSQ FQPIIIPSPS TRPNKRASPT
101: IELINKVEEE KAIKERRFYL HPSPRSKHGN AEEPELLTLF PLISPR
Best Arabidopsis Sequence Match ( AT5G08480.1 )
(BLAST)
001: MNSKGSQNVA TTCKPVTTFV QTDTNTFREI VQRLTGPTEN NAAAATPEAT VIKTAIQKRP TSKLHERRQC MRPKLEIVKP PLSFKPTEGE PDSCTTNIEE
101: EEKAIKERRF YLHPSPRSKP GYTEPELLTL FPLTSPNSSG KP
Arabidopsis Description
VQ31VQ motif-containing protein 31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP0]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.