Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g042730.1.1 | Tomato | nucleus, plastid | 66.67 | 63.95 |
| PGSC0003DMT400036669 | Potato | nucleus, plastid | 38.18 | 37.95 |
| PGSC0003DMT400030219 | Potato | cytosol | 29.09 | 32.88 |
| PGSC0003DMT400097260 | Potato | nucleus, plastid | 36.97 | 26.52 |
| PGSC0003DMT400076377 | Potato | nucleus | 32.73 | 20.61 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400073731 | EnsemblPlantsGene:PGSC0003DMG400028645 | InterPro:VQ | PANTHER:PTHR33402 | PANTHER:PTHR33402:SF3 | PFAM:PF05678 |
| PGSC:PGSC0003DMG400028645 | SEG:seg | UniParc:UPI000296B761 | UniProt:M1CSK2 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028645]
Coordinates
chr12:+:49719801..49720548
Molecular Weight (calculated)
18814.0 Da
IEP (calculated)
9.337
GRAVY (calculated)
-0.848
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSTSKNNNQ LHNNIVMNIS CNNNNNNNNN TTFVQADPSN FRSVVQKLTG FESNKLPIID RARSSTFKLH ERRHSTRNLE CIFTVHHIKW DGGSSSFLAS
101: PVSPLEMLTR GISPRSTMEE DEEEEEKRAI TEKRFYLHPN TPRASQPPQL LSLFPLQSPK ATHHS
101: PVSPLEMLTR GISPRSTMEE DEEEEEKRAI TEKRFYLHPN TPRASQPPQL LSLFPLQSPK ATHHS
001: MSHQQPPSYA TEPNTMFVQA DPSNFRNIVQ KLTGAPPDIS SSSFSAVSAA HQKLPLTPKK PAFKLHERRQ SSKKMELKVN NITNPNDAFS HFHRGFLVSP
101: VSHLDPFWAR VSPHSAREEH HAQPDKEEQK AIAEKGFYFL PSPRSGSEPA PELLPLFPLR SPNGTNHRIH EDNHRDS
101: VSHLDPFWAR VSPHSAREEH HAQPDKEEQK AIAEKGFYFL PSPRSGSEPA PELLPLFPLR SPNGTNHRIH EDNHRDS
Arabidopsis Description
VQ11VQ motif-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.