Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- mitochondrion 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81107 | Canola | nucleus | 62.76 | 70.42 |
| CDX69949 | Canola | plastid | 41.0 | 65.33 |
| Bra005995.1-P | Field mustard | cytosol, nucleus, plastid | 43.51 | 59.77 |
| AT5G08480.2 | Thale cress | cytosol, plastid | 36.82 | 50.87 |
| CDY62120 | Canola | mitochondrion, nucleus | 37.66 | 45.45 |
| CDY40742 | Canola | nucleus | 23.85 | 40.71 |
| KRH59700 | Soybean | nucleus | 30.54 | 39.25 |
| KRH41023 | Soybean | nucleus | 28.03 | 38.51 |
| PGSC0003DMT400030219 | Potato | cytosol | 21.34 | 34.93 |
| Solyc12g088490.1.1 | Tomato | cytosol | 23.01 | 33.95 |
| CDY37691 | Canola | plastid | 24.69 | 29.65 |
| CDY20126 | Canola | nucleus, plastid | 24.27 | 26.85 |
| CDX87310 | Canola | nucleus | 18.41 | 26.35 |
| CDY39978 | Canola | nucleus | 18.41 | 26.35 |
| CDX79386 | Canola | plastid | 18.41 | 25.58 |
| CDX96246 | Canola | nucleus | 22.59 | 25.47 |
| CDX97648 | Canola | plastid | 23.43 | 25.23 |
| CDX67947 | Canola | nucleus | 17.15 | 25.0 |
| CDX90141 | Canola | nucleus, plastid | 23.01 | 24.23 |
| CDY35728 | Canola | nucleus, plastid | 23.43 | 24.03 |
| CDY65903 | Canola | nucleus | 21.34 | 23.94 |
| CDY32307 | Canola | nucleus | 22.18 | 23.87 |
| CDY37597 | Canola | nucleus | 16.32 | 23.78 |
| CDY17201 | Canola | plastid | 19.25 | 23.0 |
| CDX94599 | Canola | nucleus, plastid | 23.85 | 22.98 |
| CDY15683 | Canola | nucleus, plastid | 23.43 | 22.95 |
| CDX98545 | Canola | plastid | 17.99 | 21.94 |
| CDX96247 | Canola | nucleus | 22.18 | 21.9 |
| CDY27942 | Canola | nucleus | 17.99 | 21.5 |
| CDY14349 | Canola | nucleus | 21.34 | 20.99 |
| CDY38669 | Canola | nucleus | 15.48 | 19.07 |
Protein Annotations
| EnsemblPlants:CDY60233 | EnsemblPlantsGene:GSBRNA2T00028364001 | InterPro:VQ | PANTHER:PTHR33402 | PANTHER:PTHR33402:SF2 | PFAM:PF05678 |
| ProteinID:CDY60233 | ProteinID:CDY60233.1 | SEG:seg | UniParc:UPI0004EE60FC | UniProt:A0A078J6G8 | MapMan:35.1 |
Description
BnaA03g55760DBnaA03g55760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6G8]
Coordinates
chrLK033857:+:20482..22073
Molecular Weight (calculated)
27125.7 Da
IEP (calculated)
10.101
GRAVY (calculated)
-0.493
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSVKYLITF NRDSSCKKKE KLKTVYQQQQ SLYLLFSSLS LSLFLLLSSS AFKFLVCWVQ KLGFTFTCCL WLALSEAQKN KHRCISKRVL SEKNLQMNNQ
101: GSQNVATCKP VTTFVHTDTD TFREVVQRLT GPSESNAAAI PEATVIKTAI QRKPTSKLHE RRQCMRPKLE IVKPPLSFKP TEGDKADPDS CTTNNEEEER
201: AIKERRFYLH PSPRSKPGYT EPALLTLFPL TSPNSSGRP
101: GSQNVATCKP VTTFVHTDTD TFREVVQRLT GPSESNAAAI PEATVIKTAI QRKPTSKLHE RRQCMRPKLE IVKPPLSFKP TEGDKADPDS CTTNNEEEER
201: AIKERRFYLH PSPRSKPGYT EPALLTLFPL TSPNSSGRP
001: MNSKGSQNVA TTCKPVTTFV QTDTNTFREI VQRLTGPTEN NAAAATPEAT VIKTAIQKRP TSKLHERRQC MRPKLEIVKP PLSFKPTEGE PDSCTTNIEE
101: EEKAIKERRF YLHPSPRSKP GYTEPELLTL FPLTSPNSSG KP
101: EEKAIKERRF YLHPSPRSKP GYTEPELLTL FPLTSPNSSG KP
Arabidopsis Description
VQ31VQ motif-containing protein 31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP0]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.