Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79386 | Canola | plastid | 76.83 | 73.26 |
| CDX87310 | Canola | nucleus | 71.34 | 70.06 |
| CDY39978 | Canola | nucleus | 71.34 | 70.06 |
| Bra003566.1-P | Field mustard | nucleus | 73.78 | 69.94 |
| AT1G80450.1 | Thale cress | nucleus, plastid | 68.9 | 63.84 |
| CDY37597 | Canola | nucleus | 62.8 | 62.8 |
| CDY38669 | Canola | nucleus | 55.49 | 46.91 |
| PGSC0003DMT400036669 | Potato | nucleus, plastid | 42.68 | 42.17 |
| Solyc03g117500.1.1 | Tomato | plastid | 42.68 | 41.67 |
| KRH47420 | Soybean | plastid | 42.07 | 35.75 |
| VIT_09s0002g07540.t01 | Wine grape | plastid | 39.02 | 34.41 |
| KRH44484 | Soybean | plastid | 39.63 | 33.51 |
| CDX69949 | Canola | plastid | 28.05 | 30.67 |
| GSMUA_Achr3P19850_001 | Banana | nucleus | 35.37 | 28.16 |
| CDY40742 | Canola | nucleus | 23.17 | 27.14 |
| CDX96246 | Canola | nucleus | 34.76 | 26.89 |
| CDY37691 | Canola | plastid | 32.32 | 26.63 |
| CDX97648 | Canola | plastid | 34.76 | 25.68 |
| CDX90141 | Canola | nucleus, plastid | 35.37 | 25.55 |
| CDY20126 | Canola | nucleus, plastid | 33.54 | 25.46 |
| CDY32307 | Canola | nucleus | 34.15 | 25.23 |
| CDX96247 | Canola | nucleus | 37.2 | 25.21 |
| CDY65903 | Canola | nucleus | 32.32 | 24.88 |
| CDY62120 | Canola | mitochondrion, nucleus | 29.88 | 24.75 |
| CDY35728 | Canola | nucleus, plastid | 34.76 | 24.46 |
| CDX98545 | Canola | plastid | 28.66 | 23.98 |
| CDY17201 | Canola | plastid | 28.66 | 23.5 |
| CDY14349 | Canola | nucleus | 34.76 | 23.46 |
| CDY27942 | Canola | nucleus | 28.05 | 23.0 |
| CDY15683 | Canola | nucleus, plastid | 34.15 | 22.95 |
| CDX94599 | Canola | nucleus, plastid | 34.15 | 22.58 |
| CDX81107 | Canola | nucleus | 23.78 | 18.31 |
| CDY60233 | Canola | cytosol, endoplasmic reticulum, plasma membrane, plastid | 25.0 | 17.15 |
Protein Annotations
| EnsemblPlants:CDX67947 | EnsemblPlantsGene:GSBRNA2T00099158001 | InterPro:VQ | PANTHER:PTHR33402 | PANTHER:PTHR33402:SF3 | PFAM:PF05678 |
| ProteinID:CDX67947 | ProteinID:CDX67947.1 | UniParc:UPI0004EF00A5 | MapMan:35.1 | : | : |
Description
BnaA07g19870D
Coordinates
chrLK031787:-:3047859..3048353
Molecular Weight (calculated)
18512.0 Da
IEP (calculated)
10.513
GRAVY (calculated)
-0.766
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHQNHHQLP TYATDPNTMF VQADPSNFRN IVQKLTGAPR PGLSAVSAAQ RKLPLTPKKQ AFKLHERRQT SKKMELKINN ITDDSLSHFN RGFLVSPVSH
101: LDPFWTRVSP HSAREYPHPT PDNEEKKAIA EKGFYFLPSP RSGDVPAPEL LPLFPLRSPN ATNQ
101: LDPFWTRVSP HSAREYPHPT PDNEEKKAIA EKGFYFLPSP RSGDVPAPEL LPLFPLRSPN ATNQ
001: MSHQQPPSYA TEPNTMFVQA DPSNFRNIVQ KLTGAPPDIS SSSFSAVSAA HQKLPLTPKK PAFKLHERRQ SSKKMELKVN NITNPNDAFS HFHRGFLVSP
101: VSHLDPFWAR VSPHSAREEH HAQPDKEEQK AIAEKGFYFL PSPRSGSEPA PELLPLFPLR SPNGTNHRIH EDNHRDS
101: VSHLDPFWAR VSPHSAREEH HAQPDKEEQK AIAEKGFYFL PSPRSGSEPA PELLPLFPLR SPNGTNHRIH EDNHRDS
Arabidopsis Description
VQ11VQ motif-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.