CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35728	Canola	nucleus, plastid	78.85	76.82
Bra010885.1-P	Field mustard	nucleus, plastid	54.63	76.54
AT1G28280.1	Thale cress	nucleus, plastid	70.48	64.78
CDY15683	Canola	nucleus, plastid	67.4	62.7
CDX94599	Canola	nucleus, plastid	67.4	61.69
CDY37691	Canola	plastid	51.1	58.29
VIT_00s0527g00020.t01	Wine grape	cytosol, nucleus, plastid	40.09	55.49
KRH10893	Soybean	nucleus	43.61	49.75
CDX96246	Canola	nucleus	44.05	47.17
CDY20126	Canola	nucleus, plastid	44.49	46.76
Solyc02g078030.1.1	Tomato	nucleus, plastid	53.74	46.39
CDX97648	Canola	plastid	44.49	45.5
CDY32307	Canola	nucleus	44.49	45.5
PGSC0003DMT400076377	Potato	nucleus	52.42	45.42
KRH04611	Soybean	plastid	25.99	45.38
CDY65903	Canola	nucleus	41.85	44.6
KRH37938	Soybean	mitochondrion	25.55	44.27
GSMUA_Achr4P10440_001	Banana	nucleus	40.53	43.6
CDY14349	Canola	nucleus	46.26	43.21
Zm00001d010759_P001	Maize	plastid	41.85	43.18
GSMUA_Achr8P27670_001	Banana	plastid	20.7	43.12
EES03601	Sorghum	nucleus, plastid	44.93	43.04
Os01t0747800-01	Rice	nucleus	43.61	42.86
CDX96247	Canola	nucleus	44.93	42.15
TraesCS3B01G307300.1	Wheat	nucleus, plastid	42.29	41.56
CDY17201	Canola	plastid	36.56	41.5
TraesCS3A01G273600.1	Wheat	nucleus, plastid	43.17	41.18
TraesCS3D01G272900.1	Wheat	nucleus, plastid	43.17	41.18
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	43.17	41.18
CDY27942	Canola	nucleus	36.12	41.0
TraesCS3A01G313700.1	Wheat	plastid	37.89	40.95
TraesCS3B01G158200.1	Wheat	plastid	37.89	40.95
TraesCS3D01G140600.1	Wheat	plastid	37.89	40.95
CDX98545	Canola	plastid	35.24	40.82
KRH20439	Soybean	nucleus, plastid	50.22	40.57
HORVU3Hr1G026840.1	Barley	plastid	37.89	40.57
Zm00001d038810_P001	Maize	plastid	38.77	40.55
TraesCS1B01G351200.1	Wheat	plastid	42.29	40.51
TraesCS1A01G338700.1	Wheat	plastid	42.73	40.42
GSMUA_AchrUn_...	Banana	nucleus	43.61	40.41
GSMUA_Achr4P02580_001	Banana	nucleus	45.81	40.15
TraesCS1D01G340900.1	Wheat	plastid	42.73	40.08
GSMUA_Achr7P13760_001	Banana	nucleus	43.61	39.92
Zm00001d043450_P001	Maize	nucleus, plastid	44.05	39.84
Os05t0519000-00	Rice	plastid	46.7	39.26
Os01t0201250-00	Rice	plastid	36.56	39.15
GSMUA_AchrUn_...	Banana	nucleus	43.17	38.74
GSMUA_Achr9P05800_001	Banana	nucleus	43.61	38.67
Zm00001d039428_P001	Maize	plastid	36.12	38.14
EES00109	Sorghum	cytosol, nucleus, plasma membrane, plastid	36.56	37.9
KRH21417	Soybean	nucleus	43.17	37.69
EES18519	Sorghum	plastid	41.85	37.55
CDX69949	Canola	plastid	24.67	37.33
Zm00001d008878_P001	Maize	cytosol	34.8	37.26
CDY40742	Canola	nucleus	22.47	36.43
CDX67947	Canola	nucleus	25.55	35.37
KRH50064	Soybean	nucleus, plastid	48.02	35.16
HORVU1Hr1G076390.1	Barley	plastid	41.85	34.67
HORVU3Hr1G071320.1	Barley	plastid	44.05	33.9
CDX79386	Canola	plastid	25.11	33.14
CDY37597	Canola	nucleus	23.79	32.93
CDY39978	Canola	nucleus	23.35	31.74
CDX87310	Canola	nucleus	22.91	31.14
CDY38669	Canola	nucleus	25.11	29.38
CDY62120	Canola	mitochondrion, nucleus	24.67	28.28
CDX81107	Canola	nucleus	24.23	25.82
CDY60233	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	24.23	23.01

Protein Annotations

EnsemblPlants:CDX90141	EnsemblPlantsGene:GSBRNA2T00150669001	InterPro:VQ	PANTHER:PTHR33402	PANTHER:PTHR33402:SF7	PFAM:PF05678
ProteinID:CDX90141	ProteinID:CDX90141.1	SEG:seg	UniParc:UPI0004EF3FC3	MapMan:35.1	:

Description

BnaA08g18430D

Coordinates

chrLK031862:-:284205..285029

Molecular Weight (calculated)

24923.1 Da

IEP (calculated)

10.464

GRAVY (calculated)

-0.877

Length

227 amino acids

Sequence
(BLAST)

001: MENSPRYRDA STNPIPSPRC SSSSTESNKP PTTPTRNLTP RSESGNPYPT TFVQADTTSF KQVVQMLTGS SDRPKHHNNN TSSLKPDPRS SSPSQFSIPP
101: IKAVPNKKHS SGFRLYERRN SMKHLKINPL NPVFNPVNSP RKPEILSPSI LDFPSLVLSP VTPLVPDPFN RSGSSNQSSN DEEEKAMKEK GFYLHPSPAT
201: TPMDSEPRLL PLFPVTSPRV SGSSTAS

Best Arabidopsis Sequence Match ( AT1G28280.1 )
(BLAST)

001: MENSPRYREA TNLIPSPRCH NSNNSCGMSS SSESNKPPTT PTRHVTTRSE SGNPYPTTFV QADTSSFKQV VQMLTGSAER PKHGSSLKPN PTHHQPDPRS
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSG SSSASTS

Arabidopsis Description

VQ4VQ motif-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q5M750]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.