CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030082.1-P	Field mustard	nucleus, plastid	100.0	100.0
CDX94599	Canola	nucleus, plastid	94.67	93.15
AT1G28280.1	Thale cress	nucleus, plastid	78.28	77.33
CDY35728	Canola	nucleus, plastid	71.72	75.11
CDX90141	Canola	nucleus, plastid	62.7	67.4
VIT_00s0527g00020.t01	Wine grape	cytosol, nucleus, plastid	45.08	67.07
CDY37691	Canola	plastid	46.72	57.29
KRH10893	Soybean	nucleus	44.26	54.27
KRH04611	Soybean	plastid	27.05	50.77
PGSC0003DMT400076377	Potato	nucleus	53.69	50.0
Solyc02g078030.1.1	Tomato	nucleus, plastid	52.87	49.05
KRH37938	Soybean	mitochondrion	25.82	48.09
CDX96246	Canola	nucleus	41.39	47.64
CDX97648	Canola	plastid	42.21	46.4
KRH20439	Soybean	nucleus, plastid	53.28	46.26
CDY20126	Canola	nucleus, plastid	40.57	45.83
CDY32307	Canola	nucleus	41.39	45.5
GSMUA_Achr4P10440_001	Banana	nucleus	38.11	44.08
GSMUA_Achr8P27670_001	Banana	plastid	19.67	44.04
GSMUA_AchrUn_...	Banana	nucleus	44.67	43.08
TraesCS1A01G338700.1	Wheat	plastid	42.21	42.92
CDY65903	Canola	nucleus	37.3	42.72
TraesCS1B01G351200.1	Wheat	plastid	41.39	42.62
Zm00001d010759_P001	Maize	plastid	37.7	41.82
CDX96247	Canola	nucleus	41.39	41.74
Zm00001d038810_P001	Maize	plastid	36.89	41.47
GSMUA_AchrUn_...	Banana	nucleus	41.39	41.22
CDX98545	Canola	plastid	32.79	40.82
KRH21417	Soybean	nucleus	43.44	40.77
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	39.75	40.76
CDY14349	Canola	nucleus	40.57	40.74
GSMUA_Achr7P13760_001	Banana	nucleus	41.39	40.73
Os01t0747800-01	Rice	nucleus	38.52	40.69
TraesCS1D01G340900.1	Wheat	plastid	40.16	40.5
GSMUA_Achr4P02580_001	Banana	nucleus	42.21	39.77
HORVU3Hr1G026840.1	Barley	plastid	34.43	39.62
TraesCS3D01G140600.1	Wheat	plastid	34.02	39.52
TraesCS3B01G158200.1	Wheat	plastid	34.02	39.52
GSMUA_Achr9P05800_001	Banana	nucleus	40.98	39.06
TraesCS3A01G313700.1	Wheat	plastid	33.61	39.05
TraesCS3B01G307300.1	Wheat	nucleus, plastid	36.89	38.96
EES03601	Sorghum	nucleus, plastid	37.7	38.82
Zm00001d008878_P001	Maize	cytosol	33.61	38.68
Os01t0201250-00	Rice	plastid	33.61	38.68
EES00109	Sorghum	cytosol, nucleus, plasma membrane, plastid	34.43	38.36
TraesCS3D01G272900.1	Wheat	nucleus, plastid	37.3	38.24
TraesCS3A01G273600.1	Wheat	nucleus, plastid	37.3	38.24
CDY17201	Canola	plastid	31.15	38.0
Zm00001d043450_P001	Maize	nucleus, plastid	38.93	37.85
KRH50064	Soybean	nucleus, plastid	47.95	37.74
CDY27942	Canola	nucleus	30.74	37.5
Os05t0519000-00	Rice	plastid	41.39	37.41
Zm00001d039428_P001	Maize	plastid	32.79	37.21
EES18519	Sorghum	plastid	38.52	37.15
CDX69949	Canola	plastid	22.54	36.67
CDY40742	Canola	nucleus	20.9	36.43
HORVU1Hr1G076390.1	Barley	plastid	38.93	34.67
CDX67947	Canola	nucleus	22.95	34.15
CDY37597	Canola	nucleus	22.54	33.54
CDX79386	Canola	plastid	23.36	33.14
CDY39978	Canola	nucleus	22.13	32.34
CDX87310	Canola	nucleus	21.72	31.74
HORVU3Hr1G071320.1	Barley	plastid	36.07	29.83
CDY62120	Canola	mitochondrion, nucleus	23.77	29.29
CDY38669	Canola	nucleus	21.72	27.32
CDX81107	Canola	nucleus	21.72	24.88
CDY60233	Canola	cytosol, endoplasmic reticulum, plasma membrane, plastid	22.95	23.43

Protein Annotations

EnsemblPlants:CDY15683	EnsemblPlantsGene:GSBRNA2T00089899001	InterPro:VQ	PANTHER:PTHR33402	PANTHER:PTHR33402:SF7	PFAM:PF05678
ProteinID:CDY15683	ProteinID:CDY15683.1	SEG:seg	UniParc:UPI0002541127	UniProt:A0A078FTN0	MapMan:35.1

Description

BnaA07g08540DBnaA07g08540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTN0]

Coordinates

chrLK032056:+:448857..451114

Molecular Weight (calculated)

26737.2 Da

IEP (calculated)

10.221

GRAVY (calculated)

-0.842

Length

244 amino acids

Sequence
(BLAST)

001: MERYKDASMN LIPSPRCHNN NNSCSMSSST ESNNKPPTTP TRQVTTRSES GNPYPTTFVQ ADTSSFKQVV QMLTGSSDRP KQHNTSSLKP NPTHQPDPRS
101: SPSQFSIPPI KAVNKKQSSS SSSGFRLYER RNSMKNLKIN PLNPVFNPVN SAFSPRKPEI LSPSILDFPS LVLSPVTPLI PDPFNRSGSS SQSPDEAEEK
201: AMKERGFYLH PSPATTPMDS EPRLLPLFPV TSPRVSGSST DSSS

Best Arabidopsis Sequence Match ( AT1G28280.2 )
(BLAST)

001: MENSPRYREA TNLIPSPRCH NSNNSCGMSS SSESNKPPTT PTRHVTTRSE SGNPYPTTFV QADTSSFKQV VQMLTGSAER PKHGSSLKPN PTHHQPDPRS
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSV NKR

Arabidopsis Description

VQ4VQ motif-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q5M750]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.