Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G338700.1 | Wheat | plastid | 66.42 | 75.83 |
| TraesCS1B01G351200.1 | Wheat | plastid | 62.77 | 72.57 |
| TraesCS1D01G340900.1 | Wheat | plastid | 59.49 | 67.36 |
| Zm00001d010759_P001 | Maize | plastid | 47.45 | 59.09 |
| Zm00001d038810_P001 | Maize | plastid | 44.53 | 56.22 |
| EES18519 | Sorghum | plastid | 51.82 | 56.13 |
| Os05t0519000-00 | Rice | plastid | 51.82 | 52.59 |
| VIT_19s0014g02490.t01 | Wine grape | nucleus, plastid | 36.13 | 47.14 |
| HORVU3Hr1G071320.1 | Barley | plastid | 50.73 | 47.12 |
| KRH10893 | Soybean | nucleus | 33.94 | 46.73 |
| HORVU3Hr1G026840.1 | Barley | plastid | 36.13 | 46.7 |
| GSMUA_Achr4P10440_001 | Banana | nucleus | 35.77 | 46.45 |
| PGSC0003DMT400097260 | Potato | nucleus, plastid | 37.96 | 45.22 |
| Solyc07g063070.1.1 | Tomato | nucleus, plastid | 38.32 | 45.06 |
| VIT_00s0527g00020.t01 | Wine grape | cytosol, nucleus, plastid | 26.64 | 44.51 |
| Bra010885.1-P | Field mustard | nucleus, plastid | 25.91 | 43.83 |
| KRH27258 | Soybean | nucleus, plastid | 38.69 | 43.09 |
| CDY35728 | Canola | nucleus, plastid | 36.5 | 42.92 |
| CDY37691 | Canola | plastid | 31.02 | 42.71 |
| CDX90141 | Canola | nucleus, plastid | 34.67 | 41.85 |
| KRH22072 | Soybean | nucleus, plastid | 36.86 | 40.56 |
| CDX96246 | Canola | nucleus | 31.02 | 40.09 |
| AT1G28280.1 | Thale cress | nucleus, plastid | 36.13 | 40.08 |
| KRH38333 | Soybean | plastid | 29.2 | 40.0 |
| Bra021096.1-P | Field mustard | nucleus, plastid | 31.39 | 39.81 |
| KRH55250 | Soybean | nucleus, plastid | 35.04 | 39.34 |
| CDY15683 | Canola | nucleus, plastid | 34.67 | 38.93 |
| Bra030082.1-P | Field mustard | nucleus, plastid | 34.67 | 38.93 |
| AT3G15300.1 | Thale cress | nucleus, plastid | 31.02 | 38.81 |
| Solyc02g078030.1.1 | Tomato | nucleus, plastid | 37.23 | 38.78 |
| CDY32307 | Canola | nucleus | 31.39 | 38.74 |
| CDX97648 | Canola | plastid | 31.39 | 38.74 |
| CDY20126 | Canola | nucleus, plastid | 30.29 | 38.43 |
| CDX94599 | Canola | nucleus, plastid | 34.67 | 38.31 |
| KRH26132 | Soybean | nucleus, plastid | 34.67 | 38.31 |
| Bra027262.1-P | Field mustard | plastid | 31.39 | 38.22 |
| PGSC0003DMT400076377 | Potato | nucleus | 36.5 | 38.17 |
| CDY65903 | Canola | nucleus | 29.2 | 37.56 |
| Bra003032.1-P | Field mustard | nucleus | 31.02 | 37.44 |
| CDX98545 | Canola | plastid | 26.64 | 37.24 |
| Bra022675.1-P | Field mustard | nucleus | 32.48 | 36.93 |
| AT2G33780.1 | Thale cress | nucleus | 27.37 | 36.76 |
| AT5G53830.1 | Thale cress | nucleus | 32.48 | 36.63 |
| CDX96247 | Canola | nucleus | 32.12 | 36.36 |
| KRH04611 | Soybean | plastid | 17.15 | 36.15 |
| KRH21417 | Soybean | nucleus | 33.94 | 35.77 |
| CDY14349 | Canola | nucleus | 31.39 | 35.39 |
| KRH37938 | Soybean | mitochondrion | 16.79 | 35.11 |
| KRH20439 | Soybean | nucleus, plastid | 35.04 | 34.16 |
| Bra005472.1-P | Field mustard | mitochondrion, plastid | 21.9 | 32.61 |
| CDY17201 | Canola | plastid | 23.36 | 32.0 |
| KRH50064 | Soybean | nucleus, plastid | 35.77 | 31.61 |
| CDY27942 | Canola | nucleus | 22.63 | 31.0 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G076390.1 | EnsemblPlantsGene:HORVU1Hr1G076390 | InterPro:VQ | PANTHER:PTHR33402 | PANTHER:PTHR33402:SF8 | PFAM:PF05678 |
| PRINTS:PR01217 | SEG:seg | UniParc:UPI000B466396 | UniProt:A0A287GB33 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr1H:+:514065179..514068643
Molecular Weight (calculated)
28485.1 Da
IEP (calculated)
11.225
GRAVY (calculated)
-0.286
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: SNSLAPPSLL IPTPSAVPEP SPLPLFFFIH PSPRPTNPTM EVAAPKQLLP MAPRDPNSPS SSTSSSSPSS AASPSPSHRP TPLPPSPRPV PRTIDTTPFP
101: TTFVQADTAS FKQVVQMLTG ADMPPPSSQQ AQRPPAAASS KAGAPCRPKK PAFKLYERRS SMKNLKMIAP LAMAAAAGAS PRKALPELLS PSVLDFPSLA
201: LSPVTPLLSD PFNRSASASP AEQEAAAERA AIARKGFFLH PSPRGGAGEP PPRLLPLFPV TSPRMASAAA PSSE
101: TTFVQADTAS FKQVVQMLTG ADMPPPSSQQ AQRPPAAASS KAGAPCRPKK PAFKLYERRS SMKNLKMIAP LAMAAAAGAS PRKALPELLS PSVLDFPSLA
201: LSPVTPLLSD PFNRSASASP AEQEAAAERA AIARKGFFLH PSPRGGAGEP PPRLLPLFPV TSPRMASAAA PSSE
001: MENSPRYREA TNLIPSPRCH NSNNSCGMSS SSESNKPPTT PTRHVTTRSE SGNPYPTTFV QADTSSFKQV VQMLTGSAER PKHGSSLKPN PTHHQPDPRS
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSG SSSASTS
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSG SSSASTS
Arabidopsis Description
VQ4VQ motif-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q5M750]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.