Factsheet for Bra030082.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15683	Canola	nucleus, plastid	100.0	100.0
CDX94599	Canola	nucleus, plastid	94.67	93.15
AT1G28280.1	Thale cress	nucleus, plastid	78.28	77.33
Bra010885.1-P	Field mustard	nucleus, plastid	50.0	75.31
VIT_00s0527g00020.t01	Wine grape	cytosol, nucleus, plastid	45.08	67.07
KRH10893	Soybean	nucleus	44.26	54.27
KRH04611	Soybean	plastid	27.05	50.77
PGSC0003DMT400076377	Potato	nucleus	53.69	50.0
Solyc02g078030.1.1	Tomato	nucleus, plastid	52.87	49.05
KRH37938	Soybean	mitochondrion	25.82	48.09
Bra021096.1-P	Field mustard	nucleus, plastid	40.98	46.3
KRH20439	Soybean	nucleus, plastid	53.28	46.26
Bra027262.1-P	Field mustard	plastid	42.21	45.78
GSMUA_Achr4P10440_001	Banana	nucleus	38.11	44.08
GSMUA_Achr8P27670_001	Banana	plastid	19.67	44.04
Bra022675.1-P	Field mustard	nucleus	43.03	43.57
GSMUA_AchrUn_...	Banana	nucleus	44.67	43.08
TraesCS1A01G338700.1	Wheat	plastid	42.21	42.92
Bra003032.1-P	Field mustard	nucleus	39.75	42.73
TraesCS1B01G351200.1	Wheat	plastid	41.39	42.62
Zm00001d010759_P001	Maize	plastid	37.7	41.82
Zm00001d038810_P001	Maize	plastid	36.89	41.47
GSMUA_AchrUn_...	Banana	nucleus	41.39	41.22
KRH21417	Soybean	nucleus	43.44	40.77
Bra005472.1-P	Field mustard	mitochondrion, plastid	30.74	40.76
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	39.75	40.76
GSMUA_Achr7P13760_001	Banana	nucleus	41.39	40.73
Os01t0747800-01	Rice	nucleus	38.52	40.69
TraesCS1D01G340900.1	Wheat	plastid	40.16	40.5
Bra009343.1-P	Field mustard	cytosol, plastid	16.8	40.2
GSMUA_Achr4P02580_001	Banana	nucleus	42.21	39.77
HORVU3Hr1G026840.1	Barley	plastid	34.43	39.62
TraesCS3D01G140600.1	Wheat	plastid	34.02	39.52
TraesCS3B01G158200.1	Wheat	plastid	34.02	39.52
GSMUA_Achr9P05800_001	Banana	nucleus	40.98	39.06
TraesCS3A01G313700.1	Wheat	plastid	33.61	39.05
TraesCS3B01G307300.1	Wheat	nucleus, plastid	36.89	38.96
EES03601	Sorghum	nucleus, plastid	37.7	38.82
Os01t0201250-00	Rice	plastid	33.61	38.68
Zm00001d008878_P001	Maize	cytosol	33.61	38.68
EES00109	Sorghum	cytosol, nucleus, plasma membrane, plastid	34.43	38.36
TraesCS3D01G272900.1	Wheat	nucleus, plastid	37.3	38.24
TraesCS3A01G273600.1	Wheat	nucleus, plastid	37.3	38.24
Zm00001d043450_P001	Maize	nucleus, plastid	38.93	37.85
KRH50064	Soybean	nucleus, plastid	47.95	37.74
Os05t0519000-00	Rice	plastid	41.39	37.41
Zm00001d039428_P001	Maize	plastid	32.79	37.21
EES18519	Sorghum	plastid	38.52	37.15
HORVU1Hr1G076390.1	Barley	plastid	38.93	34.67
Bra008473.1-P	Field mustard	nucleus	22.54	33.54
Bra035182.1-P	Field mustard	nucleus	22.13	32.34
Bra005995.1-P	Field mustard	cytosol, nucleus, plastid	22.13	31.03
Bra003566.1-P	Field mustard	nucleus	21.72	30.64
HORVU3Hr1G071320.1	Barley	plastid	36.07	29.83

Protein Annotations

EnsemblPlants:Bra030082.1	EnsemblPlants:Bra030082.1-P	EnsemblPlantsGene:Bra030082	InterPro:VQ	PANTHER:PTHR33402	PANTHER:PTHR33402:SF7
PFAM:PF05678	SEG:seg	UniParc:UPI0002541127	UniProt:M4EMR2	MapMan:35.1	:

Description

AT1G28280 (E=2e-101) | VQ motif-containing protein

Coordinates

chrA07:+:6711861..6712595

Molecular Weight (calculated)

26737.2 Da

IEP (calculated)

10.221

GRAVY (calculated)

-0.842

Length

244 amino acids

Sequence
(BLAST)

001: MERYKDASMN LIPSPRCHNN NNSCSMSSST ESNNKPPTTP TRQVTTRSES GNPYPTTFVQ ADTSSFKQVV QMLTGSSDRP KQHNTSSLKP NPTHQPDPRS
101: SPSQFSIPPI KAVNKKQSSS SSSGFRLYER RNSMKNLKIN PLNPVFNPVN SAFSPRKPEI LSPSILDFPS LVLSPVTPLI PDPFNRSGSS SQSPDEAEEK
201: AMKERGFYLH PSPATTPMDS EPRLLPLFPV TSPRVSGSST DSSS

Best Arabidopsis Sequence Match ( AT1G28280.2 )
(BLAST)

001: MENSPRYREA TNLIPSPRCH NSNNSCGMSS SSESNKPPTT PTRHVTTRSE SGNPYPTTFV QADTSSFKQV VQMLTGSAER PKHGSSLKPN PTHHQPDPRS
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSV NKR

Arabidopsis Description

VQ4VQ motif-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q5M750]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.