Factsheet for Bra010885.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0527g00020.t01	Wine grape	cytosol, nucleus, plastid	57.41	56.71
CDX90141	Canola	nucleus, plastid	76.54	54.63
CDY35728	Canola	nucleus, plastid	77.78	54.08
AT1G28280.1	Thale cress	nucleus, plastid	76.54	50.2
Bra030082.1-P	Field mustard	nucleus, plastid	75.31	50.0
KRH04611	Soybean	plastid	39.51	49.23
KRH37938	Soybean	mitochondrion	37.04	45.8
KRH10893	Soybean	nucleus	53.09	43.22
GSMUA_Achr8P27670_001	Banana	plastid	29.01	43.12
Bra009343.1-P	Field mustard	cytosol, plastid	25.31	40.2
Bra021096.1-P	Field mustard	nucleus, plastid	50.0	37.5
Bra027262.1-P	Field mustard	plastid	50.62	36.44
Bra005472.1-P	Field mustard	mitochondrion, plastid	40.74	35.87
PGSC0003DMT400076377	Potato	nucleus	56.79	35.11
Solyc02g078030.1.1	Tomato	nucleus, plastid	55.56	34.22
GSMUA_Achr4P10440_001	Banana	nucleus	43.21	33.18
Bra003032.1-P	Field mustard	nucleus	45.68	32.6
TraesCS1A01G338700.1	Wheat	plastid	47.53	32.08
Bra022675.1-P	Field mustard	nucleus	47.53	31.95
TraesCS1B01G351200.1	Wheat	plastid	46.3	31.65
KRH21417	Soybean	nucleus	50.62	31.54
Zm00001d038810_P001	Maize	plastid	41.36	30.88
KRH20439	Soybean	nucleus, plastid	53.09	30.61
Zm00001d010759_P001	Maize	plastid	41.36	30.45
EES03601	Sorghum	nucleus, plastid	44.44	30.38
Os01t0747800-01	Rice	nucleus	43.21	30.3
GSMUA_AchrUn_...	Banana	nucleus	45.68	30.2
TraesCS1D01G340900.1	Wheat	plastid	45.06	30.17
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	43.83	29.83
Zm00001d008878_P001	Maize	cytosol	38.89	29.72
GSMUA_AchrUn_...	Banana	nucleus	46.3	29.64
Os05t0519000-00	Rice	plastid	49.38	29.63
GSMUA_Achr7P13760_001	Banana	nucleus	45.06	29.44
TraesCS3B01G307300.1	Wheat	nucleus, plastid	41.36	29.0
GSMUA_Achr4P02580_001	Banana	nucleus	46.3	28.96
HORVU3Hr1G026840.1	Barley	plastid	37.65	28.77
Os01t0201250-00	Rice	plastid	37.65	28.77
TraesCS3A01G273600.1	Wheat	nucleus, plastid	41.98	28.57
TraesCS3A01G313700.1	Wheat	plastid	37.04	28.57
TraesCS3B01G158200.1	Wheat	plastid	37.04	28.57
TraesCS3D01G140600.1	Wheat	plastid	37.04	28.57
Zm00001d039428_P001	Maize	plastid	37.65	28.37
TraesCS3D01G272900.1	Wheat	nucleus, plastid	41.36	28.15
GSMUA_Achr9P05800_001	Banana	nucleus	44.44	28.12
Zm00001d043450_P001	Maize	nucleus, plastid	43.21	27.89
EES00109	Sorghum	cytosol, nucleus, plasma membrane, plastid	37.65	27.85
EES18519	Sorghum	plastid	43.21	27.67
Bra008473.1-P	Field mustard	nucleus	27.78	27.44
KRH50064	Soybean	nucleus, plastid	51.23	26.77
HORVU1Hr1G076390.1	Barley	plastid	43.83	25.91
Bra035182.1-P	Field mustard	nucleus	25.93	25.15
Bra003566.1-P	Field mustard	nucleus	26.54	24.86
Bra005995.1-P	Field mustard	cytosol, nucleus, plastid	25.93	24.14
HORVU3Hr1G071320.1	Barley	plastid	41.36	22.71

Protein Annotations

EnsemblPlants:Bra010885.1	EnsemblPlants:Bra010885.1-P	EnsemblPlantsGene:Bra010885	PANTHER:PTHR33402	PANTHER:PTHR33402:SF7	SEG:seg
UniParc:UPI00025456B5	UniProt:M4D332	MapMan:35.1	:	:	:

Description

AT1G28280 (E=7e-059) | VQ motif-containing protein

Coordinates

chrA08:+:16951244..16951732

Molecular Weight (calculated)

17795.0 Da

IEP (calculated)

10.617

GRAVY (calculated)

-0.759

Length

162 amino acids

Sequence
(BLAST)

001: MLTGSSDRPK HHNNNTSSLK PDPRSSSPSQ FSIPPIKAVP NKKHSSGFRL YERRNSMKHL KINPLNPVFN PVNSPRKPEI LSPSILDFPS LVLSPVTPLV
101: PDPFNRSGSS NQSSNDEEEK AMKEKGFYLH PSPATTPMDS EPRLLPLFPV TSPRVSGSST AS

Best Arabidopsis Sequence Match ( AT1G28280.1 )
(BLAST)

001: MENSPRYREA TNLIPSPRCH NSNNSCGMSS SSESNKPPTT PTRHVTTRSE SGNPYPTTFV QADTSSFKQV VQMLTGSAER PKHGSSLKPN PTHHQPDPRS
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSG SSSASTS

Arabidopsis Description

VQ4VQ motif-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q5M750]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.