Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P13760_001 | Banana | nucleus | 67.76 | 66.94 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 58.37 | 60.08 |
| GSMUA_AchrUn_... | Banana | nucleus | 60.0 | 58.1 |
| GSMUA_Achr8P27670_001 | Banana | plastid | 25.31 | 56.88 |
| Solyc07g063070.1.1 | Tomato | nucleus, plastid | 50.2 | 52.79 |
| VIT_00s0527g00020.t01 | Wine grape | cytosol, nucleus, plastid | 35.1 | 52.44 |
| VIT_19s0014g02490.t01 | Wine grape | nucleus, plastid | 44.49 | 51.9 |
| KRH10893 | Soybean | nucleus | 42.04 | 51.76 |
| PGSC0003DMT400097260 | Potato | nucleus, plastid | 48.57 | 51.74 |
| GSMUA_Achr4P02580_001 | Banana | nucleus | 53.88 | 50.97 |
| GSMUA_Achr4P10440_001 | Banana | nucleus | 42.45 | 49.29 |
| KRH27258 | Soybean | nucleus, plastid | 48.57 | 48.37 |
| KRH38333 | Soybean | plastid | 38.78 | 47.5 |
| GSMUA_Achr9P05800_001 | Banana | nucleus | 48.98 | 46.88 |
| Bra010885.1-P | Field mustard | nucleus, plastid | 30.2 | 45.68 |
| KRH55250 | Soybean | nucleus, plastid | 45.31 | 45.49 |
| KRH26132 | Soybean | nucleus, plastid | 45.71 | 45.16 |
| KRH22072 | Soybean | nucleus, plastid | 45.71 | 44.98 |
| Bra021096.1-P | Field mustard | nucleus, plastid | 39.18 | 44.44 |
| CDY20126 | Canola | nucleus, plastid | 38.78 | 43.98 |
| CDY35728 | Canola | nucleus, plastid | 41.63 | 43.78 |
| CDX97648 | Canola | plastid | 39.59 | 43.69 |
| CDX90141 | Canola | nucleus, plastid | 40.41 | 43.61 |
| CDX96246 | Canola | nucleus | 37.55 | 43.4 |
| Bra027262.1-P | Field mustard | plastid | 39.59 | 43.11 |
| AT3G15300.1 | Thale cress | nucleus, plastid | 38.37 | 42.92 |
| AT1G28280.1 | Thale cress | nucleus, plastid | 42.86 | 42.51 |
| CDY37691 | Canola | plastid | 34.29 | 42.21 |
| CDY32307 | Canola | nucleus | 37.96 | 41.89 |
| CDY15683 | Canola | nucleus, plastid | 41.22 | 41.39 |
| Bra030082.1-P | Field mustard | nucleus, plastid | 41.22 | 41.39 |
| KRH37938 | Soybean | mitochondrion | 22.04 | 41.22 |
| Solyc02g078030.1.1 | Tomato | nucleus, plastid | 44.08 | 41.06 |
| PGSC0003DMT400076377 | Potato | nucleus | 43.27 | 40.46 |
| CDX94599 | Canola | nucleus, plastid | 40.82 | 40.32 |
| CDY65903 | Canola | nucleus | 34.69 | 39.91 |
| Bra003032.1-P | Field mustard | nucleus | 36.73 | 39.65 |
| Bra022675.1-P | Field mustard | nucleus | 38.37 | 39.0 |
| KRH21417 | Soybean | nucleus | 41.22 | 38.85 |
| CDX96247 | Canola | nucleus | 37.96 | 38.43 |
| KRH04611 | Soybean | plastid | 20.0 | 37.69 |
| CDY14349 | Canola | nucleus | 37.14 | 37.45 |
| AT5G53830.1 | Thale cress | nucleus | 37.14 | 37.45 |
| KRH20439 | Soybean | nucleus, plastid | 41.63 | 36.3 |
| AT2G33780.1 | Thale cress | nucleus | 30.2 | 36.27 |
| CDX98545 | Canola | plastid | 28.98 | 36.22 |
| KRH50064 | Soybean | nucleus, plastid | 42.45 | 33.55 |
| Bra005472.1-P | Field mustard | mitochondrion, plastid | 24.49 | 32.61 |
| CDY17201 | Canola | plastid | 25.31 | 31.0 |
| CDY27942 | Canola | nucleus | 24.49 | 30.0 |
| GSMUA_Achr3P19850_001 | Banana | nucleus | 24.9 | 29.61 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP23150_001 | EnsemblPlants:GSMUA_AchrUn_randomT23150_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG23150_001 | InterPro:VQ | PANTHER:PTHR33402 | PANTHER:PTHR33402:SF9 |
| PFAM:PF05678 | SEG:seg | UniParc:UPI000295ADD7 | UniProt:M0UBM3 | MapMan:35.1 | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG23150_001]
Coordinates
chrchrUn_random:-:113307788..113308525
Molecular Weight (calculated)
25879.6 Da
IEP (calculated)
10.402
GRAVY (calculated)
-0.353
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MENHSKAQET NSSSSTNYSR NNGATTPAAA PSPSSPPALP PKTIPKACEV NPYPTTFVHA DTSSFKQVVQ MLTGSAETVA AAAAASSTAQ KAPVAPATKA
101: TGPKKPAFKL YERRNSLKNL KVLSPLVPAF FNSSPNPNSL VAAAGFSPRK QPEILSPSML DFPSLVLSPV TPLIPDPFNR PPHHPTSAAA KWAEDRAIAE
201: KGFYLHPSPR ASTDAEPPRL LPLFPVTSPK VSFDLSLAVP HSSTR
101: TGPKKPAFKL YERRNSLKNL KVLSPLVPAF FNSSPNPNSL VAAAGFSPRK QPEILSPSML DFPSLVLSPV TPLIPDPFNR PPHHPTSAAA KWAEDRAIAE
201: KGFYLHPSPR ASTDAEPPRL LPLFPVTSPK VSFDLSLAVP HSSTR
001: MENSPRYREA TNLIPSPRCH NSNNSCGMSS SSESNKPPTT PTRHVTTRSE SGNPYPTTFV QADTSSFKQV VQMLTGSAER PKHGSSLKPN PTHHQPDPRS
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSV NKR
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSV NKR
Arabidopsis Description
VQ4VQ motif-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q5M750]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.