Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010885.1-P | Field mustard | nucleus, plastid | 56.71 | 57.41 |
| KRH04611 | Soybean | plastid | 37.8 | 47.69 |
| KRH37938 | Soybean | mitochondrion | 37.2 | 46.56 |
| VIT_19s0014g02490.t01 | Wine grape | nucleus, plastid | 57.93 | 45.24 |
| Bra030082.1-P | Field mustard | nucleus, plastid | 67.07 | 45.08 |
| CDY15683 | Canola | nucleus, plastid | 67.07 | 45.08 |
| KRH10893 | Soybean | nucleus | 53.66 | 44.22 |
| GSMUA_Achr8P27670_001 | Banana | plastid | 29.27 | 44.04 |
| CDX94599 | Canola | nucleus, plastid | 65.85 | 43.55 |
| CDY35728 | Canola | nucleus, plastid | 60.98 | 42.92 |
| AT1G28280.1 | Thale cress | nucleus, plastid | 62.2 | 41.3 |
| CDX90141 | Canola | nucleus, plastid | 55.49 | 40.09 |
| CDY37691 | Canola | plastid | 48.17 | 39.7 |
| PGSC0003DMT400076377 | Potato | nucleus | 60.98 | 38.17 |
| Solyc02g078030.1.1 | Tomato | nucleus, plastid | 59.76 | 37.26 |
| KRH20439 | Soybean | nucleus, plastid | 62.2 | 36.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.44 | 35.1 |
| Zm00001d038810_P001 | Maize | plastid | 45.73 | 34.56 |
| GSMUA_Achr4P10440_001 | Banana | nucleus | 43.9 | 34.12 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.44 | 33.99 |
| TraesCS3A01G313700.1 | Wheat | plastid | 43.29 | 33.81 |
| Zm00001d008878_P001 | Maize | cytosol | 43.29 | 33.49 |
| GSMUA_Achr7P13760_001 | Banana | nucleus | 50.0 | 33.06 |
| KRH21417 | Soybean | nucleus | 51.83 | 32.69 |
| Os01t0201250-00 | Rice | plastid | 42.07 | 32.55 |
| HORVU3Hr1G026840.1 | Barley | plastid | 42.07 | 32.55 |
| EES00109 | Sorghum | cytosol, nucleus, plasma membrane, plastid | 43.29 | 32.42 |
| TraesCS3B01G158200.1 | Wheat | plastid | 41.46 | 32.38 |
| TraesCS3D01G140600.1 | Wheat | plastid | 41.46 | 32.38 |
| AT2G33780.1 | Thale cress | nucleus | 40.24 | 32.35 |
| Zm00001d039428_P001 | Maize | plastid | 42.07 | 32.09 |
| TraesCS1A01G338700.1 | Wheat | plastid | 46.95 | 32.08 |
| TraesCS1B01G351200.1 | Wheat | plastid | 46.34 | 32.07 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 45.73 | 31.51 |
| TraesCS1D01G340900.1 | Wheat | plastid | 46.34 | 31.41 |
| KRH50064 | Soybean | nucleus, plastid | 57.93 | 30.65 |
| Zm00001d010759_P001 | Maize | plastid | 40.85 | 30.45 |
| Bra005472.1-P | Field mustard | mitochondrion, plastid | 34.15 | 30.43 |
| Os01t0747800-01 | Rice | nucleus | 42.07 | 29.87 |
| GSMUA_Achr9P05800_001 | Banana | nucleus | 45.73 | 29.3 |
| EES03601 | Sorghum | nucleus, plastid | 42.07 | 29.11 |
| VIT_09s0002g07540.t01 | Wine grape | plastid | 32.93 | 29.03 |
| GSMUA_Achr4P02580_001 | Banana | nucleus | 45.12 | 28.57 |
| TraesCS3B01G307300.1 | Wheat | nucleus, plastid | 40.24 | 28.57 |
| TraesCS3A01G273600.1 | Wheat | nucleus, plastid | 40.85 | 28.15 |
| EES18519 | Sorghum | plastid | 43.29 | 28.06 |
| CDY17201 | Canola | plastid | 34.15 | 28.0 |
| Zm00001d043450_P001 | Maize | nucleus, plastid | 42.68 | 27.89 |
| TraesCS3D01G272900.1 | Wheat | nucleus, plastid | 40.24 | 27.73 |
| CDY27942 | Canola | nucleus | 33.54 | 27.5 |
| Os05t0519000-00 | Rice | plastid | 45.12 | 27.41 |
| HORVU1Hr1G076390.1 | Barley | plastid | 44.51 | 26.64 |
| VIT_04s0008g06930.t01 | Wine grape | cytosol | 28.66 | 25.68 |
| HORVU3Hr1G071320.1 | Barley | plastid | 40.85 | 22.71 |
Protein Annotations
| ArrayExpress:VIT_00s0527g00020 | EMBL:AM431127 | EMBL:FN595810 | EnsemblPlants:VIT_00s0527g00020.t01 | EnsemblPlantsGene:VIT_00s0527g00020 | EntrezGene:100262292 |
| EntrezGene:LOC100262292 | PANTHER:PTHR33402 | PANTHER:PTHR33402:SF9 | ProteinID:CAN78123 | ProteinID:CAN78123.1 | ProteinID:CCB53647 |
| ProteinID:CCB53647.1 | RefSeq:XP_002280261 | RefSeq:XP_002280261.2 | SEG:seg | TIGR:TC59859 | unigene:Vvi.8826 |
| UniParc:UPI0002109646 | UniProt:F6HJS6 | wikigene:100262292 | wikigene:LOC100262292 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrUn:-:31296258..31297173
Molecular Weight (calculated)
17526.9 Da
IEP (calculated)
10.428
GRAVY (calculated)
-0.445
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTGSSETAK QASASKPVSD PRTHIPPIKT GAKKQPGFKL YERRNSLKNL KLSPLIPGFV QNNSGFSPRK PEILSPSMLD FPALVLSPVT PLIPDPFNRS
101: PMNSCSSSAS ANANLDSEAE EKAIAEKGFF LHPSPATTPR DSEPRLLSLF PVTSPRVPGS STSS
101: PMNSCSSSAS ANANLDSEAE EKAIAEKGFF LHPSPATTPR DSEPRLLSLF PVTSPRVPGS STSS
001: MENSPRYREA TNLIPSPRCH NSNNSCGMSS SSESNKPPTT PTRHVTTRSE SGNPYPTTFV QADTSSFKQV VQMLTGSAER PKHGSSLKPN PTHHQPDPRS
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSG SSSASTS
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSG SSSASTS
Arabidopsis Description
VQ4VQ motif-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q5M750]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.