CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 2
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008878_P001	Maize	cytosol	78.08	80.66
TraesCS3A01G313700.1	Wheat	plastid	70.32	73.33
HORVU3Hr1G026840.1	Barley	plastid	68.49	70.75
TraesCS3D01G140600.1	Wheat	plastid	67.58	70.48
TraesCS3B01G158200.1	Wheat	plastid	67.58	70.48
Os01t0201250-00	Rice	plastid	59.82	61.79
KRH10893	Soybean	nucleus	39.73	43.72
VIT_00s0527g00020.t01	Wine grape	cytosol, nucleus, plastid	32.42	43.29
VIT_19s0014g02490.t01	Wine grape	nucleus, plastid	40.64	42.38
GSMUA_AchrUn_...	Banana	nucleus	48.86	42.29
EES03601	Sorghum	nucleus, plastid	43.38	40.08
EES18519	Sorghum	plastid	46.12	39.92
PGSC0003DMT400097260	Potato	nucleus, plastid	41.55	39.57
CDX96246	Canola	nucleus	37.9	39.15
Solyc07g063070.1.1	Tomato	nucleus, plastid	41.55	39.06
KRH22072	Soybean	nucleus, plastid	43.38	38.15
Bra021096.1-P	Field mustard	nucleus, plastid	37.44	37.96
CDX97648	Canola	plastid	38.36	37.84
KRH27258	Soybean	nucleus, plastid	42.47	37.8
Bra010885.1-P	Field mustard	nucleus, plastid	27.85	37.65
KRH38333	Soybean	plastid	34.25	37.5
Bra003032.1-P	Field mustard	nucleus	38.81	37.44
CDY32307	Canola	nucleus	37.9	37.39
Bra027262.1-P	Field mustard	plastid	38.36	37.33
CDY65903	Canola	nucleus	36.07	37.09
CDY20126	Canola	nucleus, plastid	36.53	37.04
CDX98545	Canola	plastid	32.88	36.73
CDY37691	Canola	plastid	33.33	36.68
CDX90141	Canola	nucleus, plastid	37.9	36.56
CDY35728	Canola	nucleus, plastid	38.81	36.48
KRH55250	Soybean	nucleus, plastid	40.64	36.48
Bra022675.1-P	Field mustard	nucleus	39.73	36.1
CDX96247	Canola	nucleus	39.73	35.95
AT5G53830.1	Thale cress	nucleus	39.73	35.8
KRH26132	Soybean	nucleus, plastid	40.18	35.48
AT1G28280.1	Thale cress	nucleus, plastid	39.73	35.22
AT3G15300.1	Thale cress	nucleus, plastid	35.16	35.16
CDY14349	Canola	nucleus	38.81	34.98
Bra030082.1-P	Field mustard	nucleus, plastid	38.36	34.43
CDY15683	Canola	nucleus, plastid	38.36	34.43
PGSC0003DMT400076377	Potato	nucleus	41.1	34.35
KRH21417	Soybean	nucleus	40.64	34.23
CDX94599	Canola	nucleus, plastid	38.36	33.87
Solyc02g078030.1.1	Tomato	nucleus, plastid	40.18	33.46
KRH37938	Soybean	mitochondrion	19.18	32.06
KRH04611	Soybean	plastid	18.72	31.54
AT2G33780.1	Thale cress	nucleus	29.22	31.37
KRH20439	Soybean	nucleus, plastid	40.18	31.32
Bra005472.1-P	Field mustard	mitochondrion, plastid	24.2	28.8
KRH50064	Soybean	nucleus, plastid	40.18	28.39
CDY27942	Canola	nucleus	22.83	25.0
CDY17201	Canola	plastid	22.83	25.0

Protein Annotations

EnsemblPlants:EES00109	EnsemblPlantsGene:SORBI_3003G027400	EntrezGene:8080513	InterPro:VQ	PANTHER:PTHR33402	PANTHER:PTHR33402:SF14
PFAM:PF05678	ProteinID:EES00109	ProteinID:EES00109.1	RefSeq:XP_002454989.1	SEG:seg	UniParc:UPI0001A843C1
UniProt:C5XL90	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:2408735..2410667

Molecular Weight (calculated)

22189.7 Da

IEP (calculated)

10.016

GRAVY (calculated)

-0.153

Length

219 amino acids

Sequence
(BLAST)

001: MDAGAATTAR ERPVPPSPVP MAIPLPVPLP QASADPSNPF PTTFVQADTT SFKQVVQILT GTPETAAAAA SGGAQASPPA PQKPAPAPPG PKKPAFKLYE
101: RRSSMKSLKM LCPLLPAAAA FAAGGSAGGF SPRGFSPRGL EVLSPSMLDF PSLALGSPVT PLPPLPGSEE AAAAEDRAIA EKGFYLHPSP RGNAGAGGDL
201: QPPPRLLPLF PVQSPTGRP

Best Arabidopsis Sequence Match ( AT1G28280.2 )
(BLAST)

001: MENSPRYREA TNLIPSPRCH NSNNSCGMSS SSESNKPPTT PTRHVTTRSE SGNPYPTTFV QADTSSFKQV VQMLTGSAER PKHGSSLKPN PTHHQPDPRS
101: TPSSFSIPPI KAVPNKKQSS SSASGFRLYE RRNSMKNLKI NPLNPVFNPV NSAFSPRKPE ILSPSILDFP SLVLSPVTPL IPDPFDRSGS SNQSPNELAA
201: EEKAMKERGF YLHPSPATTP MDPEPRLLPL FPVTSPRVSV NKR

Arabidopsis Description

VQ4VQ motif-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q5M750]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.