CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96415
KRH00834
KRH06592
KRH40392
KRH43402
KRH48074
KRH50149
KRH53873
KRH59551
KRH64076
KRH68154

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38470.1	KRH43402	AT3G18690.1	15990873
AT2G38470.1	KRH53873	AT3G18690.1	15990873
AT2G38470.1	KRH59551	AT3G18690.1	15990873
AT2G38470.1	KRH64076	AT3G18690.1	15990873
AT2G38470.1	KRH43402	AT3G18690.1	18650934
AT2G38470.1	KRH53873	AT3G18690.1	18650934
AT2G38470.1	KRH59551	AT3G18690.1	18650934
AT2G38470.1	KRH64076	AT3G18690.1	18650934
AT2G38470.1	KRH43402	AT3G18690.1	21203436
AT2G38470.1	KRH53873	AT3G18690.1	21203436
AT2G38470.1	KRH59551	AT3G18690.1	21203436
AT2G38470.1	KRH64076	AT3G18690.1	21203436
AT2G38470.1	KRG96415	AT3G62770.1	21395886
AT2G38470.1	KRH50149	AT3G62770.1	21395886
AT2G38470.1	KRH68154	AT3G62770.1	21395886
AT2G38470.1	KRH00834	AT4G01370.1	18650934
AT2G38470.1	KRH06592	AT4G01370.1	18650934
AT2G38470.1	KRH40392	AT4G01370.1	18650934
AT2G38470.1	KRH48074	AT4G01370.1	18650934

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17125	Soybean	nucleus	94.48	95.3
VIT_06s0004g07500.t01	Wine grape	nucleus	71.55	68.82
KRG98195	Soybean	nucleus	64.14	68.63
KRH30155	Soybean	nucleus	64.48	68.25
PGSC0003DMT400043204	Potato	nucleus	56.9	61.8
Solyc06g066370.2.1	Tomato	nucleus	56.55	61.31
GSMUA_Achr6P32720_001	Banana	nucleus	45.34	57.68
GSMUA_Achr3P09940_001	Banana	nucleus	35.69	56.56
Bra005104.1-P	Field mustard	nucleus	43.1	54.7
CDY65564	Canola	nucleus, plastid	43.97	54.14
CDX91470	Canola	nucleus, plastid	43.79	53.36
Bra017117.1-P	Field mustard	nucleus	42.41	53.13
CDY07729	Canola	nucleus	43.1	52.85
Bra000064.1-P	Field mustard	nucleus	42.93	52.64
CDY69941	Canola	nucleus, plastid	43.28	52.62
Os01t0826400-01	Rice	extracellular	50.34	52.61
GSMUA_Achr11P...	Banana	nucleus	42.24	52.58
CDY18383	Canola	nucleus, plastid	43.45	52.39
CDY14459	Canola	nucleus, plastid	43.97	52.04
KXG33637	Sorghum	nucleus	49.48	51.62
Zm00001d043025_P001	Maize	nucleus	49.31	51.53
TraesCS3D01G341100.1	Wheat	nucleus	48.97	50.62
TraesCS3B01G379200.1	Wheat	nucleus	48.62	50.45
TraesCS3A01G347500.1	Wheat	nucleus	48.62	50.18
KRH00362	Soybean	nucleus	46.55	49.91
AT2G38470.1	Thale cress	nucleus, plastid	44.66	49.9
KRH40825	Soybean	nucleus	46.38	49.54
CDY48650	Canola	nucleus, plastid	37.24	48.76
TraesCS1D01G292700.1	Wheat	nucleus, plastid	42.07	48.13
TraesCS1A01G298600.1	Wheat	nucleus, plastid	41.9	48.12
KRH76058	Soybean	nucleus	41.9	47.93
HORVU1Hr1G070250.2	Barley	nucleus, plastid	42.24	47.85
TraesCS1B01G308200.1	Wheat	nucleus, plastid	41.55	47.35
KRH65526	Soybean	nucleus	41.03	46.94
Zm00001d012482_P001	Maize	nucleus	47.59	46.54
Zm00001d038451_P001	Maize	nucleus	44.66	46.5
HORVU3Hr1G088200.4	Barley	nucleus, plastid	47.93	46.41
Os05t0474800-01	Rice	nucleus	44.31	44.93
GSMUA_Achr8P01790_001	Banana	nucleus	41.38	42.11
KRH34225	Soybean	nucleus	13.28	40.1
OQU78174	Sorghum	nucleus	44.66	39.91
KRH70820	Soybean	nucleus, plastid	25.0	39.84
KRH55277	Soybean	nucleus	13.97	38.21
KRH49522	Soybean	extracellular, plasma membrane	16.03	36.9
KRG89512	Soybean	nucleus	27.24	35.99
KRH74950	Soybean	nucleus	28.1	35.82
KRH67621	Soybean	nucleus	27.41	35.49
KRH14276	Soybean	nucleus	35.69	35.38
KRH46302	Soybean	nucleus	34.48	34.66
KRH50544	Soybean	nucleus	26.38	34.62
KRH73864	Soybean	nucleus	35.0	34.52
KRG98564	Soybean	nucleus	34.14	34.32
KRG95903	Soybean	nucleus	27.76	34.18
KRH44949	Soybean	nucleus	29.83	33.08
KRH01236	Soybean	nucleus	29.66	33.08
KRH62550	Soybean	nucleus	37.59	28.65
KRH56379	Soybean	nucleus	37.07	27.71
KRH03056	Soybean	nucleus	5.52	27.12
KRH40304	Soybean	nucleus	34.31	27.11
KRH00919	Soybean	nucleus	34.48	26.88
KRH34226	Soybean	nucleus	14.66	25.3
KRH74020	Soybean	nucleus	21.55	24.65
KRH14103	Soybean	nucleus	21.38	24.41
KRH26105	Soybean	nucleus	19.48	24.2
KRH54934	Soybean	nucleus	19.14	23.62
KRH03057	Soybean	nucleus	14.66	22.02
KRH72303	Soybean	nucleus	19.66	21.39
KRH34224	Soybean	nucleus	13.1	20.71

Protein Annotations

EntrezGene:100127385	MapMan:15.5.22	Gene3D:2.20.25.80	MapMan:26.8.3.3.1	EMBL:ACUP02001240	EnsemblPlantsGene:GLYMA_02G232600
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1JHI8
InterPro:IPR003657	InterPro:IPR036576	EnsemblPlants:KRH72765	ProteinID:KRH72765	ProteinID:KRH72765.1	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002337953
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:42001353..42004784

Molecular Weight (calculated)

63382.4 Da

IEP (calculated)

7.432

GRAVY (calculated)

-0.949

Length

580 amino acids

Sequence
(BLAST)

001: MASSSGSLDT SASANSFTNF TFSTHPFMTT SFSDLLASPT DNNKPPHGGG GGLSERTGSG VPKFKSTPPP SLPLSPPPIS PSSYFSIPPG LSPAELLDSP
101: VLLNSSNILP SPTTGAFVAR SFNWKSSSGG NQRIVKEEDK GFSNFSFQTQ QGPPASSTAT YQSSNVTVQT QQPWSYQETT KQDNFSSGKS MMKTEKSSSM
201: QSFSPEIASV QNNHSNGFQS DYGNYPPQSQ TLSRRSDDGY NWRKYGQKQV KGSENPRSYY KCTYPNCPTK KKVERSLDGQ ITEIVYKGTH NHPKPQNTRR
301: NSSNSSSLAI PHSNPISAEI PDQSYATHGS GQMDSAATPE NSSISIGDDD FEQSSQKCKS GGDEYDEDEP DAKRWKIEGE NEGMSAPGSR TVREPRVVVQ
401: TTSDIDILDD GYRWRKYGQK VVKGNPNPRS YYKCTHPGCP VRKHVERASH DLRAVITTYE GKHNHDVPAA RGSGSHSVNR PMPNNASNPT NTAATAISPL
501: QVIQHSDNSH QNQRSQAPPE GQSPFTLEML QSPGSFGFSG FGNPMQSYMN QQQQQLSDNV FSSRAKEEPR DDMFLESLLC

Best Arabidopsis Sequence Match ( AT2G38470.1 )
(BLAST)

001: MAASFLTMDN SRTRQNMNGS ANWSQQSGRT STSSLEDLEI PKFRSFAPSS ISISPSLVSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNVTNQKG
101: INEGDKSNNN NFNLFDFSFH TQSSGVSAPT TTTTTTTTTT TTNSSIFQSQ EQQKKNQSEQ WSQTETRPNN QAVSYNGREQ RKGEDGYNWR KYGQKQVKGS
201: ENPRSYYKCT FPNCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS SSSTFHSAVY NASLDHNRQA SSDQPNSNNS FHQSDSFGMQ QEDNTTSDSV
301: GDDEFEQGSS IVSRDEEDCG SEPEAKRWKG DNETNGGNGG GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI GCPVRKHVER
401: ASHDMRAVIT TYEGKHNHDV PAARGSGYAT NRAPQDSSSV PIRPAAIAGH SNYTTSSQAP YTLQMLHNNN TNTGPFGYAM NNNNNNSNLQ TQQNFVGGGF
501: SRAKEEPNEE TSFFDSFMP

Arabidopsis Description

WRKY33WRKY33 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.