Factsheet for GSMUA_Achr11P19710_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr6P13020_001
GSMUA_Achr7P03200_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38470.1	GSMUA_Achr10P...	AT3G18690.1	15990873
AT2G38470.1	GSMUA_Achr6P13020_001	AT3G18690.1	15990873
AT2G38470.1	GSMUA_Achr7P03200_001	AT3G18690.1	15990873
AT2G38470.1	GSMUA_Achr10P...	AT3G18690.1	18650934
AT2G38470.1	GSMUA_Achr6P13020_001	AT3G18690.1	18650934
AT2G38470.1	GSMUA_Achr7P03200_001	AT3G18690.1	18650934
AT2G38470.1	GSMUA_Achr10P...	AT3G18690.1	21203436
AT2G38470.1	GSMUA_Achr6P13020_001	AT3G18690.1	21203436
AT2G38470.1	GSMUA_Achr7P03200_001	AT3G18690.1	21203436

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P09940_001	Banana	nucleus	38.63	49.18
GSMUA_Achr6P32720_001	Banana	nucleus	44.42	45.39
Solyc06g066370.2.1	Tomato	nucleus	51.5	44.86
PGSC0003DMT400043204	Potato	nucleus	51.29	44.76
Bra017117.1-P	Field mustard	nucleus	42.7	42.98
Bra005104.1-P	Field mustard	nucleus	41.85	42.67
CDY69941	Canola	nucleus, plastid	43.56	42.56
KRH17125	Soybean	nucleus	52.36	42.43
KRH72765	Soybean	nucleus	52.58	42.24
CDY18383	Canola	nucleus, plastid	43.56	42.2
KRG98195	Soybean	nucleus	48.93	42.07
CDY07729	Canola	nucleus	42.49	41.86
Bra000064.1-P	Field mustard	nucleus	42.49	41.86
CDY65564	Canola	nucleus, plastid	42.06	41.61
KRH30155	Soybean	nucleus	48.93	41.61
CDX91470	Canola	nucleus, plastid	42.49	41.6
VIT_06s0004g07500.t01	Wine grape	nucleus	53.65	41.46
CDY14459	Canola	nucleus, plastid	43.35	41.22
CDY48650	Canola	nucleus, plastid	37.77	39.73
AT2G38470.1	Thale cress	nucleus, plastid	43.78	39.31
GSMUA_Achr8P01790_001	Banana	nucleus	43.13	35.26
GSMUA_Achr7P25840_001	Banana	nucleus	18.03	34.01
GSMUA_Achr4P14270_001	Banana	nucleus	32.83	33.85
GSMUA_Achr10P...	Banana	nucleus	32.83	33.05
GSMUA_Achr4P07230_001	Banana	nucleus	32.19	31.91
GSMUA_Achr7P26450_001	Banana	nucleus	31.97	31.17
GSMUA_Achr7P00610_001	Banana	nucleus	31.97	30.91
GSMUA_Achr4P13970_001	Banana	nucleus	33.26	30.21
GSMUA_Achr6P16760_001	Banana	nucleus	30.9	29.88
GSMUA_Achr5P23900_001	Banana	nucleus	35.19	29.03
GSMUA_Achr6P03500_001	Banana	nucleus	31.97	28.93
GSMUA_Achr1P17160_001	Banana	nucleus	24.89	28.22
GSMUA_Achr5P04150_001	Banana	nucleus	36.91	27.17
GSMUA_Achr4P16840_001	Banana	nucleus	24.46	27.08
GSMUA_Achr11P...	Banana	nucleus	36.91	26.58
GSMUA_Achr3P29850_001	Banana	nucleus	32.19	26.04
GSMUA_AchrUn_...	Banana	nucleus	25.32	25.76
GSMUA_Achr4P01600_001	Banana	nucleus	36.7	25.68
GSMUA_Achr10P...	Banana	nucleus	24.89	24.52
GSMUA_Achr9P19580_001	Banana	nucleus	25.75	21.51

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr11G19710_001	EnsemblPlants:GSMUA_Achr11P19710_001	EnsemblPlants:GSMUA_Achr11T19710_001	InterPro:IPR003657	InterPro:IPR036576
UniProt:M0RTQ1	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI0002962E47	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G19710_001]

Coordinates

chr11:-:20794806..20798624

Molecular Weight (calculated)

50262.0 Da

IEP (calculated)

7.652

GRAVY (calculated)

-0.550

Length

466 amino acids

Sequence
(BLAST)

001: MASSAASSWH ADAFAFSTGS FTELLSGAAA DAREFSDGVA GDGTDLPKFK FIAPPSLPIS PSSSYFAIPA GFSPAALLDS PVLLSSGCLG EFSFQNGTKQ
101: ASCFHPSSAS IPSVPIAPSC SSSFPIGCTH HAQAVQTLQR RSDDGYNWRK YGQKQVKGSE NPRSYYKCTY PSCPTKKKIE RSLDGQITEI VYKGTHNHPK
201: PRSTTRNLAC AQATRSLMLE SVATPDNSSV SFGDDDLDLG SQVSKSGVDE FEEEEPDAKR WKGKQEGEGA GSRTVREPRV VVQTTSDIDI LDDGYRWRKY
301: GQKVYAYISC HLLSSSNCRS YYKCTTVGCS VRKHVERACH DLRAVITTYE GKHNHDVPAA RGSGGQGSSS FAMAIRPTAT TSSHQNQMLI TNSIFSGKSD
401: GSANPSPFNP QNPRNYEFSS GYDSSISTSY TDPQQRGQIQ SVFCKAAVKG EGDEIFYIPS PTSASS

Best Arabidopsis Sequence Match ( AT2G38470.1 )
(BLAST)

001: MAASFLTMDN SRTRQNMNGS ANWSQQSGRT STSSLEDLEI PKFRSFAPSS ISISPSLVSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNVTNQKG
101: INEGDKSNNN NFNLFDFSFH TQSSGVSAPT TTTTTTTTTT TTNSSIFQSQ EQQKKNQSEQ WSQTETRPNN QAVSYNGREQ RKGEDGYNWR KYGQKQVKGS
201: ENPRSYYKCT FPNCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS SSSTFHSAVY NASLDHNRQA SSDQPNSNNS FHQSDSFGMQ QEDNTTSDSV
301: GDDEFEQGSS IVSRDEEDCG SEPEAKRWKG DNETNGGNGG GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI GCPVRKHVER
401: ASHDMRAVIT TYEGKHNHDV PAARGSGYAT NRAPQDSSSV PIRPAAIAGH SNYTTSSQAP YTLQMLHNNN TNTGPFGYAM NNNNNNSNLQ TQQNFVGGGF
501: SRAKEEPNEE TSFFDSFMP

Arabidopsis Description

WRKY33WRKY33 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.