Factsheet for GSMUA_Achr3P29850_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P13970_001	Banana	nucleus	65.8	73.88
GSMUA_Achr7P25840_001	Banana	nucleus	30.73	71.66
KXG36569	Sorghum	nucleus	51.56	48.61
Zm00001d021947_P002	Maize	nucleus	50.87	47.8
Zm00001d006702_P001	Maize	nucleus	50.35	47.54
Os07t0583700-01	Rice	nucleus	50.87	47.41
VIT_19s0090g01720.t01	Wine grape	nucleus	46.53	45.42
KRG98564	Soybean	nucleus	42.88	42.81
VIT_00s0463g00010.t01	Wine grape	nucleus	45.14	42.48
Bra026414.1-P	Field mustard	nucleus	38.89	41.87
KRH46302	Soybean	nucleus	41.67	41.59
CDX94303	Canola	nucleus	38.37	41.54
CDX89317	Canola	nucleus	38.37	41.39
Bra028971.1-P	Field mustard	nucleus	34.72	41.24
KRH14276	Soybean	nucleus	41.67	41.03
CDX92808	Canola	nucleus	37.15	40.84
AT4G26640.2	Thale cress	nucleus	39.24	40.57
CDY46692	Canola	nucleus	36.81	40.38
CDY70490	Canola	nucleus	36.11	40.15
KRH73864	Soybean	nucleus	40.97	40.14
CDX97359	Canola	nucleus	36.98	39.66
CDY14304	Canola	nucleus	37.5	39.49
Bra010431.1-P	Field mustard	nucleus	37.15	39.27
GSMUA_Achr3P09940_001	Banana	nucleus	24.65	38.8
PGSC0003DMT400076670	Potato	nucleus	41.15	38.79
PGSC0003DMT400057409	Potato	nucleus	39.41	38.09
Solyc12g014610.1.1	Tomato	nucleus	40.28	37.97
Solyc07g065260.2.1	Tomato	nucleus	39.06	37.75
KRH49522	Soybean	extracellular, plasma membrane	14.76	33.73
VIT_12s0057g00550.t01	Wine grape	nucleus	23.44	33.5
GSMUA_Achr6P32720_001	Banana	nucleus	25.52	32.24
GSMUA_Achr11P...	Banana	nucleus	26.04	32.19
GSMUA_Achr4P14270_001	Banana	nucleus	25.17	32.08
GSMUA_Achr10P...	Banana	nucleus	25.69	31.97
GSMUA_Achr6P16760_001	Banana	nucleus	26.74	31.95
GSMUA_Achr7P26450_001	Banana	nucleus	26.39	31.8
GSMUA_Achr4P07230_001	Banana	nucleus	25.69	31.49
TraesCS2A01G189700.1	Wheat	nucleus	33.33	31.37
TraesCS2B01G217400.2	Wheat	nucleus	33.16	31.11
Solyc12g006170.1.1	Tomato	nucleus	22.4	31.08
HORVU2Hr1G036320.1	Barley	nucleus	33.16	31.06
Solyc07g047960.2.1	Tomato	nucleus	21.88	30.51
GSMUA_Achr7P00610_001	Banana	nucleus	25.52	30.5
GSMUA_Achr5P23900_001	Banana	nucleus	29.86	30.44
CDX93073	Canola	nucleus	19.27	30.16
GSMUA_Achr8P01790_001	Banana	nucleus	29.51	29.82
TraesCS2D01G198100.4	Wheat	nucleus	32.99	29.78
GSMUA_Achr6P03500_001	Banana	nucleus	26.56	29.71
PGSC0003DMT400015754	Potato	nucleus	21.18	28.91
Bra019095.1-P	Field mustard	nucleus	37.15	28.38
GSMUA_Achr1P17160_001	Banana	nucleus	20.14	28.22
GSMUA_Achr4P16840_001	Banana	nucleus	20.49	28.03
GSMUA_Achr11P...	Banana	nucleus	30.38	27.05
GSMUA_Achr4P01600_001	Banana	nucleus	31.08	26.88
CDY50038	Canola	nucleus	20.31	26.83
GSMUA_Achr5P04150_001	Banana	nucleus	29.17	26.54
GSMUA_AchrUn_...	Banana	nucleus	20.83	26.2
Bra013187.1-P	Field mustard	nucleus	20.31	26.17
PGSC0003DMT400074158	Potato	nucleus	23.26	24.41
GSMUA_Achr10P...	Banana	nucleus	19.97	24.31
KRH74020	Soybean	nucleus	20.83	23.67
KRH14103	Soybean	nucleus	20.83	23.62
AT2G04880.1	Thale cress	nucleus	19.44	23.0
GSMUA_Achr9P19580_001	Banana	nucleus	20.14	20.79

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr3G29850_001	EnsemblPlants:GSMUA_Achr3P29850_001	EnsemblPlants:GSMUA_Achr3T29850_001	InterPro:IPR003657	InterPro:IPR036576
UniProt:M0SJ01	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI00029571BF	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

Putative Probable WRKY transcription factor 20 [Source:GMGC_GENE;Acc:GSMUA_Achr3G29850_001]

Coordinates

chr3:+:28824486..28829947

Molecular Weight (calculated)

62982.4 Da

IEP (calculated)

6.398

GRAVY (calculated)

-0.658

Length

576 amino acids

Sequence
(BLAST)

001: MPPARLPITR APCLTIPPGF SPSALLESPV LLTNMKAEPS PTTGTLNLSS VIDKTVCSYT LSSAKDASDV SAYDGGNSGD FEFKPHVPAS NSHLELMELL
101: NENVNYTRLI FLHNNMSNIN NQIRSQDRNC ITCNNELAPL ASAPNSTTKV SNLRSSLPAE AASGDLQLTK CSEQSSQMSQ SDPSEPTPSS LLEKSAEDGY
201: NWRKYGQKHV KGSEYPRSYY KCTHPNCEMK KQIERSHDGQ ITGIIYIGKH DHPKPHPNRR LAAGAILSCQ EEEKTDNFSS LMSAEDESTS APGPTYHQAD
301: RNSTTELSPA SISENDVKVG CGQSDNCDEV AGDADLESKR RKIEINNNDA ASIGKLNHEP RVVVQTLSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT
401: SAGCPVRKHV ERASHDPKAV ITTYEGKHNH DVPAAKTANH EASVSMVTDG DNSLSIHASA ALNGMMRMRH FTHPFIQMES NAISLDLGVG ISPVQSEITN
501: EKQQCLENFQ IQHHQPQCVD SGNLVIQTTP LSNFHGSSHT RIYPSGEDKG EGFTFKATPM SSDMYYSAAG NLVMGP

Best Arabidopsis Sequence Match ( AT4G26640.2 )
(BLAST)

001: MNPQANDRKE FQGDCSATGD LTAKHDSAGG NGGGGARYKL MSPAKLPISR STDITIPPGL SPTSFLESPV FISNIKPEPS PTTGSLFKPR PVHISASSSS
101: YTGRGFHQNT FTEQKSSEFE FRPPASNMVY AELGKIRSEP PVHFQGQGHG SSHSPSSISD AAGSSSELSR PTPPCQMTPT SSDIPAGSDQ EESIQTSQND
201: SRGSTPSILA DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN CEVKKLFERS HDGQITDIIY KGTHDHPKPQ PGRRNSGGMA AQEERLDKYP SSTGRDEKGS
301: GVYNLSNPNE QTGNPEVPPI SASDDGGEAA ASNRNKDEPD DDDPFSKRRR MEGAMEITPL VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP
401: RSYYKCTAHG CPVRKHVERA SHDPKAVITT YEGKHDHDVP TSKSSSNHEI QPRFRPDETD TISLNLGVGI SSDGPNHASN EHQHQNQQLV NQTHPNGVNF
501: RFVHASPMSS YYASLNSGMN QYGQRETKNE TQNGDISSLN NSSYPYPPNM GRVQSGP

Arabidopsis Description

WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.