Factsheet for TraesCS2A01G189700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G217400.2	Wheat	nucleus	97.22	96.91
HORVU2Hr1G036320.1	Barley	nucleus	95.1	94.63
TraesCS2D01G198100.4	Wheat	nucleus	96.41	92.48
GSMUA_Achr7P25840_001	Banana	nucleus	15.85	39.27
Os07t0583700-01	Rice	nucleus	38.07	37.7
Zm00001d021947_P002	Maize	nucleus	37.75	37.68
KXG36569	Sorghum	nucleus	37.58	37.64
Bra028971.1-P	Field mustard	nucleus	29.74	37.53
Zm00001d006702_P001	Maize	nucleus	37.09	37.21
GSMUA_Achr4P13970_001	Banana	nucleus	30.72	36.65
CDY70490	Canola	nucleus	30.23	35.71
TraesCS1A01G070400.1	Wheat	nucleus	25.33	35.23
CDX92808	Canola	nucleus	29.74	34.73
KRG98564	Soybean	nucleus	32.19	34.14
KRH49522	Soybean	extracellular, plasma membrane	14.05	34.13
KRH46302	Soybean	nucleus	32.03	33.97
CDX89317	Canola	nucleus	29.41	33.71
KRH14276	Soybean	nucleus	32.19	33.68
VIT_19s0090g01720.t01	Wine grape	nucleus	32.35	33.56
CDY46692	Canola	nucleus	28.76	33.52
CDX94303	Canola	nucleus	29.09	33.46
GSMUA_Achr3P29850_001	Banana	nucleus	31.37	33.33
Bra026414.1-P	Field mustard	nucleus	29.09	33.27
KRH73864	Soybean	nucleus	31.7	32.99
CDX97359	Canola	nucleus	28.92	32.96
VIT_12s0057g00550.t01	Wine grape	nucleus	21.41	32.51
AT4G26640.2	Thale cress	nucleus	29.58	32.5
Bra010431.1-P	Field mustard	nucleus	28.92	32.48
CDY14304	Canola	nucleus	28.76	32.18
PGSC0003DMT400057409	Potato	nucleus	31.05	31.88
VIT_00s0463g00010.t01	Wine grape	nucleus	31.86	31.86
Solyc12g014610.1.1	Tomato	nucleus	31.54	31.59
PGSC0003DMT400076670	Potato	nucleus	31.37	31.42
Solyc07g065260.2.1	Tomato	nucleus	30.56	31.38
TraesCS1A01G298600.1	Wheat	nucleus, plastid	24.67	29.9
TraesCS3A01G347500.1	Wheat	nucleus	26.63	29.0
CDX93073	Canola	nucleus	17.32	28.8
Solyc07g047960.2.1	Tomato	nucleus	19.28	28.57
TraesCS5A01G104900.1	Wheat	nucleus	22.71	27.97
PGSC0003DMT400015754	Potato	nucleus	19.12	27.73
Solyc12g006170.1.1	Tomato	nucleus	18.63	27.47
TraesCS5A01G396800.1	Wheat	nucleus	18.95	27.36
TraesCS4A01G162500.1	Wheat	nucleus	21.24	26.64
TraesCS5A01G258100.1	Wheat	nucleus	29.25	26.44
CDY50038	Canola	nucleus	18.3	25.69
TraesCS7A01G240800.1	Wheat	nucleus	26.63	25.04
Bra013187.1-P	Field mustard	nucleus	18.14	24.83
TraesCS2A01G330500.1	Wheat	nucleus	29.74	24.76
TraesCS2A01G182700.1	Wheat	nucleus	18.46	24.3
KRH74020	Soybean	nucleus	19.77	23.87
KRH14103	Soybean	nucleus	19.61	23.62
Bra019095.1-P	Field mustard	nucleus	29.09	23.61
AT2G04880.1	Thale cress	nucleus	18.14	22.79
PGSC0003DMT400074158	Potato	nucleus	19.28	21.49
TraesCS7A01G294800.2	Wheat	nucleus	17.48	20.5

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF79	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS2A01G189700	EnsemblPlants:TraesCS2A01G189700.1
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2A:-:156367774..156375206

Molecular Weight (calculated)

66060.1 Da

IEP (calculated)

6.826

GRAVY (calculated)

-0.784

Length

612 amino acids

Sequence
(BLAST)

001: MADSPNPSSG DLPSPAGSSP DKPYPADRRV AALAGAGARY KAMSPARLPI SREPCLTIPA GFSPSALLDS PVLLTNFKVE PSPTTGSLSM AAIMHKSAHP
101: DMPSPRDKSI RAHEDGGSRD FEFKPHLNSS SQSVAPAMSD LKKHEHSMQN QSMNPSSSSS NMVNENRPPC SRESSLTVNV SAPNQPVGMV GLTDSMPAEV
201: GTSEPQQMNS SDNAMQEPQS ENVADKSADD GYNWRKYGQK HVKGSENPRS YYKCTHPNCE VKKLLERAVD GLITEVVYKG RHNHPKPQPN RRLAGGAVPL
301: NQGEERYDGA AAADDKSSNA LSNLANAVNS PGMVEPVPVS VSDDDIDAGG GRSYPGDDGT EEEDLESKRR KMESAGIDAA LMGKPNREPR VVVQTVSEVD
401: ILDDGYRWRK YGQKVVKGNP NPRSYYKCTS TGCPVRKHVE RASHDPKSVI TTYEGKHNHE VPAARNAIHE MSAPPMKNVV HQINSNMPSS IGGMMRACEV
501: RNFSNQYSQA AETDNVSLDL GVGISPNHSD ATNQMQSTGP DQMQYQMQPM ASMYSNMRHP SMAMPTVQGN SAGRMYGSRE DKGSEGFTFR ATPMDHSANL
601: CYSGAGNLVM GP

Best Arabidopsis Sequence Match ( AT4G26640.2 )
(BLAST)

001: MNPQANDRKE FQGDCSATGD LTAKHDSAGG NGGGGARYKL MSPAKLPISR STDITIPPGL SPTSFLESPV FISNIKPEPS PTTGSLFKPR PVHISASSSS
101: YTGRGFHQNT FTEQKSSEFE FRPPASNMVY AELGKIRSEP PVHFQGQGHG SSHSPSSISD AAGSSSELSR PTPPCQMTPT SSDIPAGSDQ EESIQTSQND
201: SRGSTPSILA DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN CEVKKLFERS HDGQITDIIY KGTHDHPKPQ PGRRNSGGMA AQEERLDKYP SSTGRDEKGS
301: GVYNLSNPNE QTGNPEVPPI SASDDGGEAA ASNRNKDEPD DDDPFSKRRR MEGAMEITPL VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP
401: RSYYKCTAHG CPVRKHVERA SHDPKAVITT YEGKHDHDVP TSKSSSNHEI QPRFRPDETD TISLNLGVGI SSDGPNHASN EHQHQNQQLV NQTHPNGVNF
501: RFVHASPMSS YYASLNSGMN QYGQRETKNE TQNGDISSLN NSSYPYPPNM GRVQSGP

Arabidopsis Description

WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.