Factsheet for TraesCS1A01G070400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G184500.1
TraesCS1B01G192600.3
TraesCS1D01G192200.1
TraesCS2A01G298100.1
TraesCS2B01G314600.1
TraesCS2D01G296200.1
TraesCS5A01G027100.1
TraesCS5B01G026300.1
TraesCS5D01G034800.1
TraesCS7A01G111300.1
TraesCS7A01G326900.1
TraesCS7B01G009200.1
TraesCS7B01G227600.1
TraesCS7D01G106400.1
TraesCS7D01G323700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30250.1	TraesCS7A01G111300.1	AT2G43790.1	15990873
AT2G30250.1	TraesCS7B01G009200.1	AT2G43790.1	15990873
AT2G30250.1	TraesCS7D01G106400.1	AT2G43790.1	15990873
AT2G30250.1	TraesCS2A01G298100.1	AT3G18690.1	15990873
AT2G30250.1	TraesCS2B01G314600.1	AT3G18690.1	15990873
AT2G30250.1	TraesCS2D01G296200.1	AT3G18690.1	15990873
AT2G30250.1	TraesCS5A01G027100.1	AT3G18690.1	15990873
AT2G30250.1	TraesCS5B01G026300.1	AT3G18690.1	15990873
AT2G30250.1	TraesCS5D01G034800.1	AT3G18690.1	15990873
AT2G30250.1	TraesCS7A01G326900.1	AT3G18690.1	15990873
AT2G30250.1	TraesCS7B01G227600.1	AT3G18690.1	15990873
AT2G30250.1	TraesCS7D01G323700.1	AT3G18690.1	15990873
AT2G30250.1	TraesCS1A01G184500.1	AT4G01370.1	15990873
AT2G30250.1	TraesCS1B01G192600.3	AT4G01370.1	15990873
AT2G30250.1	TraesCS1D01G192200.1	AT4G01370.1	15990873

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G072900.1	Wheat	nucleus	94.55	89.66
TraesCS1B01G088900.2	Wheat	nucleus	92.05	88.43
Os05t0343400-01	Rice	nucleus	73.18	66.12
Zm00001d038023_P001	Maize	nucleus	71.14	64.01
Zm00001d010399_P001	Maize	nucleus	71.82	63.45
KXG21728	Sorghum	nucleus	72.27	61.51
AT5G07100.1	Thale cress	nucleus	36.59	52.1
CDY05016	Canola	nucleus	36.59	50.47
Bra028707.1-P	Field mustard	nucleus	36.36	50.16
CDY14055	Canola	nucleus	35.0	48.28
CDY29685	Canola	nucleus	37.27	46.86
Bra021623.1-P	Field mustard	nucleus	37.05	46.57
CDX97834	Canola	nucleus	37.95	46.26
CDY10720	Canola	nucleus	38.41	45.31
Bra018325.1-P	Field mustard	nucleus	38.41	45.31
CDY24017	Canola	nucleus	37.27	43.39
CDY02051	Canola	nucleus	27.27	43.32
CDX84848	Canola	nucleus	37.05	43.12
Bra022786.1-P	Field mustard	nucleus	36.59	42.59
AT2G30250.1	Thale cress	nucleus	37.95	42.49
TraesCS3A01G347500.1	Wheat	nucleus	48.64	38.08
TraesCS1A01G298600.1	Wheat	nucleus, plastid	41.14	35.84
KRH40825	Soybean	nucleus	42.73	34.62
KRH00362	Soybean	nucleus	42.5	34.57
KRH76058	Soybean	nucleus	39.32	34.12
KRH65526	Soybean	nucleus	39.09	33.92
TraesCS5A01G396800.1	Wheat	nucleus	29.09	30.19
TraesCS5A01G104900.1	Wheat	nucleus	32.73	28.97
TraesCS4A01G162500.1	Wheat	nucleus	30.91	27.87
TraesCS2A01G182700.1	Wheat	nucleus	27.05	25.59
TraesCS2A01G189700.1	Wheat	nucleus	35.23	25.33
TraesCS5A01G258100.1	Wheat	nucleus	37.73	24.52
TraesCS7A01G240800.1	Wheat	nucleus	35.45	23.96
TraesCS2A01G330500.1	Wheat	nucleus	37.05	22.18
TraesCS7A01G294800.2	Wheat	nucleus	25.0	21.07

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF86	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS1A01G070400	EnsemblPlants:TraesCS1A01G070400.1
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1A:-:53187366..53189477

Molecular Weight (calculated)

47544.1 Da

IEP (calculated)

7.939

GRAVY (calculated)

-0.688

Length

440 amino acids

Sequence
(BLAST)

001: MSSSTGSLDH AGFTFTPPPF ITSFTELLSG SGAGDAERSP RGFNRGGRAG APKFKSAQPP SLPISSPFSC FSVPAGLSPA ELLDSPVLLN YSHILASPTT
101: GAIPAQRCDW QASADLNTFQ QDELGLSGFS FHAVKSNATV NAQVNYLPLF KEQQEQQQEE VVQVSNKSSS SSGNNKQVED GYNWRKYGQK QVKGSENPRS
201: YYKCTYNNCS MKKKVERSLA DGRITQIVYK GAHDHPKPLS TRRNSSGCAA VVAEDHTNGS EHSGPTPENS SVTFGDDEAD KPETKRRKEH GDNEGSSGGT
301: GGCGKPVREP RLVVQTLSDI DILDDGFRWR KYGQKVVKGN PNPRSYYKCT TVGCPVRKHV ERASHDNRAV ITTYEGKHSH DVPIGRGRAL PASSSSDSSA
401: VIWPAAAVQA PCTLEMLAGH PGYAAKDEPR DDMFVESLLC

Best Arabidopsis Sequence Match ( AT5G07100.1 )
(BLAST)

001: MGSFDRQRAV PKFKTATPSP LPLSPSPYFT MPPGLTPADF LDSPLLFTSS NILPSPTTGT FPAQSLNYNN NGLLIDKNEI KYEDTTPPLF LPSMVTQPLP
101: QLDLFKSEIM SSNKTSDDGY NWRKYGQKQV KGSENPRSYF KCTYPNCLTK KKVETSLVKG QMIEIVYKGS HNHPKPQSTK RSSSTAIAAH QNSSNGDGKD
201: IGEDETEAKR WKREENVKEP RVVVQTTSDI DILDDGYRWR KYGQKVVKGN PNPRSYYKCT FTGCFVRKHV ERAFQDPKSV ITTYEGKHKH QIPTPRRGPV
301: LRLLGKTET

Arabidopsis Description

WRKY26Probable WRKY transcription factor 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5T3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.