Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84848 | Canola | nucleus | 95.5 | 95.5 |
| CDY02051 | Canola | nucleus | 64.55 | 88.09 |
| CDY29685 | Canola | nucleus | 81.48 | 88.0 |
| CDY10720 | Canola | nucleus | 86.24 | 87.4 |
| CDX97834 | Canola | nucleus | 83.07 | 86.98 |
| AT2G30250.1 | Thale cress | nucleus | 86.51 | 83.21 |
| CDY05016 | Canola | nucleus | 38.89 | 46.08 |
| CDY14055 | Canola | nucleus | 38.1 | 45.14 |
| TraesCS1A01G070400.1 | Wheat | nucleus | 43.39 | 37.27 |
| TraesCS1B01G088900.2 | Wheat | nucleus | 42.86 | 35.37 |
| CDY65564 | Canola | nucleus, plastid | 43.65 | 35.03 |
| TraesCS1D01G072900.1 | Wheat | nucleus | 42.86 | 34.91 |
| Os05t0343400-01 | Rice | nucleus | 44.71 | 34.7 |
| Zm00001d010399_P001 | Maize | nucleus | 45.24 | 34.34 |
| CDY07729 | Canola | nucleus | 42.86 | 34.25 |
| CDX91470 | Canola | nucleus, plastid | 43.12 | 34.24 |
| CDY69941 | Canola | nucleus, plastid | 43.12 | 34.17 |
| Zm00001d038023_P001 | Maize | nucleus | 43.92 | 33.95 |
| CDY18383 | Canola | nucleus, plastid | 43.12 | 33.89 |
| KXG21728 | Sorghum | nucleus | 44.97 | 32.88 |
| CDY14459 | Canola | nucleus, plastid | 42.59 | 32.86 |
| CDY48650 | Canola | nucleus, plastid | 35.98 | 30.7 |
| KRH00362 | Soybean | nucleus | 43.39 | 30.31 |
| KRH76058 | Soybean | nucleus | 40.48 | 30.18 |
| KRH65526 | Soybean | nucleus | 40.21 | 29.98 |
| KRH40825 | Soybean | nucleus | 42.86 | 29.83 |
| CDY33788 | Canola | nucleus | 34.13 | 29.19 |
| CDY53941 | Canola | nucleus | 33.86 | 29.09 |
| CDY36419 | Canola | nucleus | 34.92 | 29.01 |
| CDX98138 | Canola | nucleus | 34.92 | 28.88 |
| CDY62213 | Canola | nucleus | 35.45 | 28.88 |
| CDY16122 | Canola | nucleus | 33.86 | 28.57 |
| CDX96873 | Canola | nucleus | 35.19 | 28.54 |
| CDY03003 | Canola | nucleus | 35.71 | 27.61 |
| CDY45169 | Canola | nucleus | 34.92 | 27.16 |
| CDY70490 | Canola | nucleus | 36.24 | 26.45 |
| CDX74281 | Canola | nucleus | 31.48 | 26.39 |
| CDY37191 | Canola | nucleus | 33.6 | 26.13 |
| CDX74976 | Canola | nucleus | 26.72 | 25.38 |
| CDY42736 | Canola | nucleus | 35.45 | 25.33 |
| CDX94335 | Canola | nucleus | 34.13 | 25.1 |
| CDY69527 | Canola | nucleus | 35.45 | 24.68 |
| CDX94303 | Canola | nucleus | 34.66 | 24.62 |
| CDX92808 | Canola | nucleus | 33.86 | 24.43 |
| CDX91348 | Canola | nucleus | 25.93 | 24.38 |
| CDX89317 | Canola | nucleus | 34.39 | 24.34 |
| CDY46692 | Canola | nucleus | 33.6 | 24.19 |
| CDX89336 | Canola | nucleus | 34.13 | 24.16 |
| CDY14304 | Canola | nucleus | 34.66 | 23.95 |
| CDX97359 | Canola | nucleus | 33.86 | 23.84 |
| CDY72350 | Canola | nucleus | 8.99 | 23.45 |
| CDX93073 | Canola | nucleus | 22.49 | 23.1 |
| CDY36788 | Canola | nucleus | 37.83 | 22.92 |
| CDY11947 | Canola | nucleus | 34.13 | 22.47 |
| CDY49388 | Canola | nucleus | 38.89 | 21.91 |
| CDY62293 | Canola | nucleus | 11.64 | 21.67 |
| CDY36463 | Canola | nucleus | 22.75 | 21.55 |
| CDY50038 | Canola | nucleus | 24.6 | 21.33 |
| CDY62292 | Canola | nucleus | 11.38 | 20.67 |
| CDX79729 | Canola | nucleus | 17.2 | 20.19 |
| CDY23265 | Canola | nucleus | 24.34 | 20.13 |
| CDY46769 | Canola | nucleus | 17.2 | 20.12 |
| CDY46768 | Canola | nucleus | 17.2 | 20.12 |
| CDY47543 | Canola | nucleus | 14.81 | 19.79 |
| CDY32799 | Canola | nucleus | 29.89 | 18.8 |
| CDY47546 | Canola | nucleus | 19.05 | 18.32 |
| CDY08253 | Canola | nucleus | 19.31 | 17.55 |
| CDY26094 | Canola | nucleus | 19.31 | 17.55 |
| CDY13396 | Canola | nucleus | 23.81 | 16.95 |
| CDY10548 | Canola | nucleus | 18.52 | 16.24 |
| CDY59057 | Canola | nucleus | 18.52 | 15.66 |
| CDY52777 | Canola | nucleus, plastid | 6.61 | 14.62 |
| CDY67588 | Canola | nucleus | 17.2 | 12.6 |
| CDX72277 | Canola | nucleus | 23.81 | 12.28 |
| CDY54360 | Canola | nucleus | 17.46 | 11.87 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:A0A078GFW6 | UniProt:A0A078GFW6 | EnsemblPlants:CDY24017 | ProteinID:CDY24017 |
| ProteinID:CDY24017.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00024537001 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31221 |
| PANTHER:PTHR31221:SF1 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0004EABD3A | InterPro:WRKY_dom | InterPro:WRKY_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g16740DBnaC03g16740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFW6]
Coordinates
chrLK032152:+:487212..488791
Molecular Weight (calculated)
42348.1 Da
IEP (calculated)
7.219
GRAVY (calculated)
-0.843
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTSFTDLL ASSGVDFYEE DEDFLCGFSP ERTGSGLPKF KTAQPPPLPI SQSFAFSDLL DSPLLLSSSH SLISPTTGAF PFQGFNGTNN HSDIPWQLQP
101: QTQPSNASSA LQETYAVQDL PKKKDPVPRE FAAHSLGSDR QVKVPSYMVS KNSNDGYGWR KYGQKQVKKS KNPRSYFKCT YPNCVSKKIV ETASDGQITE
201: IIYKGGHNHP KPEFTKRPSG SASANARRMF NPSSVVSDTH DQSENSSISF DYSDLEQKSF KSEYGEIDEE EEQPEMKRLK REGEDEGMSI EVSRGVKEPK
301: VVVQTISDID VLVDGFRWRK YGQKVVKGNT NPRSYYKCTF QGCGVRKQIE RSAEDERAVL TTYEGRHNHD IPTALRRS
101: QTQPSNASSA LQETYAVQDL PKKKDPVPRE FAAHSLGSDR QVKVPSYMVS KNSNDGYGWR KYGQKQVKKS KNPRSYFKCT YPNCVSKKIV ETASDGQITE
201: IIYKGGHNHP KPEFTKRPSG SASANARRMF NPSSVVSDTH DQSENSSISF DYSDLEQKSF KSEYGEIDEE EEQPEMKRLK REGEDEGMSI EVSRGVKEPK
301: VVVQTISDID VLVDGFRWRK YGQKVVKGNT NPRSYYKCTF QGCGVRKQIE RSAEDERAVL TTYEGRHNHD IPTALRRS
001: MSSTSFTDLL GSSGVDCYED DEDLRVSGSS FGGYYPERTG SGLPKFKTAQ PPPLPISQSS HNFTFSDYLD SPLLLSSSHS LISPTTGTFP LQGFNGTTNN
101: HSDFPWQLQS QPSNASSALQ ETYGVQDHEK KQEMIPNEIA TQNNNQSFGT ERQIKIPAYM VSRNSNDGYG WRKYGQKQVK KSENPRSYFK CTYPDCVSKK
201: IVETASDGQI TEIIYKGGHN HPKPEFTKRP SQSSLPSSVN GRRLFNPASV VSEPHDQSEN SSISFDYSDL EQKSFKSEYG EIDEEEEQPE MKRMKREGED
301: EGMSIEVSKG VKEPRVVVQT ISDIDVLIDG FRWRKYGQKV VKGNTNPRSY YKCTFQGCGV KKQVERSAAD ERAVLTTYEG RHNHDIPTAL RRS
101: HSDFPWQLQS QPSNASSALQ ETYGVQDHEK KQEMIPNEIA TQNNNQSFGT ERQIKIPAYM VSRNSNDGYG WRKYGQKQVK KSENPRSYFK CTYPDCVSKK
201: IVETASDGQI TEIIYKGGHN HPKPEFTKRP SQSSLPSSVN GRRLFNPASV VSEPHDQSEN SSISFDYSDL EQKSFKSEYG EIDEEEEQPE MKRMKREGED
301: EGMSIEVSKG VKEPRVVVQT ISDIDVLIDG FRWRKYGQKV VKGNTNPRSY YKCTFQGCGV KKQVERSAAD ERAVLTTYEG RHNHDIPTAL RRS
Arabidopsis Description
WRKY25Probable WRKY transcription factor 25 [Source:UniProtKB/Swiss-Prot;Acc:O22921]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.