CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67903
CDX74352
CDX75979
CDX76661
CDX82333
CDX89148
CDX91889
CDX92261
CDX93962
CDX99326
CDY11447
CDY25117
CDY68488
CDY71738

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38470.1	CDX75979	AT3G18690.1	15990873
AT2G38470.1	CDX82333	AT3G18690.1	15990873
AT2G38470.1	CDX92261	AT3G18690.1	15990873
AT2G38470.1	CDX99326	AT3G18690.1	15990873
AT2G38470.1	CDY68488	AT3G18690.1	15990873
AT2G38470.1	CDY71738	AT3G18690.1	15990873
AT2G38470.1	CDX75979	AT3G18690.1	18650934
AT2G38470.1	CDX82333	AT3G18690.1	18650934
AT2G38470.1	CDX92261	AT3G18690.1	18650934
AT2G38470.1	CDX99326	AT3G18690.1	18650934
AT2G38470.1	CDY68488	AT3G18690.1	18650934
AT2G38470.1	CDY71738	AT3G18690.1	18650934
AT2G38470.1	CDX75979	AT3G18690.1	21203436
AT2G38470.1	CDX82333	AT3G18690.1	21203436
AT2G38470.1	CDX92261	AT3G18690.1	21203436
AT2G38470.1	CDX99326	AT3G18690.1	21203436
AT2G38470.1	CDY68488	AT3G18690.1	21203436
AT2G38470.1	CDY71738	AT3G18690.1	21203436
AT2G38470.1	CDX67903	AT3G62770.1	21395886
AT2G38470.1	CDX76661	AT3G62770.1	21395886
AT2G38470.1	CDX89148	AT3G62770.1	21395886
AT2G38470.1	CDX93962	AT3G62770.1	21395886
AT2G38470.1	CDY11447	AT3G62770.1	21395886
AT2G38470.1	CDY25117	AT3G62770.1	21395886
AT2G38470.1	CDX74352	AT4G01370.1	18650934
AT2G38470.1	CDX91889	AT4G01370.1	18650934

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000064.1-P	Field mustard	nucleus	92.04	95.35
CDY07729	Canola	nucleus	91.84	95.14
CDY65564	Canola	nucleus, plastid	80.2	83.44
CDX91470	Canola	nucleus, plastid	80.41	82.77
CDY18383	Canola	nucleus, plastid	80.82	82.33
CDY69941	Canola	nucleus, plastid	79.8	81.97
AT2G38470.1	Thale cress	nucleus, plastid	83.88	79.19
CDY48650	Canola	nucleus, plastid	66.33	73.36
CDY05016	Canola	nucleus	31.02	47.65
CDY14055	Canola	nucleus	30.0	46.08
Solyc09g014990.2.1	Tomato	nucleus	48.16	44.61
CDY29685	Canola	nucleus	31.84	44.57
GSMUA_Achr3P09940_001	Banana	nucleus	33.27	44.54
CDX97834	Canola	nucleus	32.65	44.32
CDY10720	Canola	nucleus	33.67	44.24
KRH72765	Soybean	nucleus	52.04	43.97
KRH17125	Soybean	nucleus	51.43	43.83
GSMUA_Achr11P...	Banana	nucleus	41.22	43.35
CDX84848	Canola	nucleus	33.27	43.12
CDY24017	Canola	nucleus	32.86	42.59
VIT_08s0058g00690.t01	Wine grape	nucleus	47.76	42.39
GSMUA_Achr6P32720_001	Banana	nucleus	38.98	41.89
KRG98195	Soybean	nucleus	46.12	41.7
PGSC0003DMT400030388	Potato	nucleus	34.69	41.67
KXG33637	Sorghum	nucleus	46.53	41.01
Zm00001d043025_P001	Maize	nucleus	46.12	40.72
KRH30155	Soybean	nucleus	45.31	40.51
Os01t0826400-01	Rice	extracellular	45.71	40.36
TraesCS1A01G298600.1	Wheat	nucleus, plastid	40.82	39.6
TraesCS3D01G341100.1	Wheat	nucleus	45.31	39.57
TraesCS1D01G292700.1	Wheat	nucleus, plastid	40.82	39.45
CDY02051	Canola	nucleus	22.24	39.35
TraesCS1B01G308200.1	Wheat	nucleus, plastid	40.82	39.29
HORVU1Hr1G070250.2	Barley	nucleus, plastid	41.02	39.26
TraesCS3B01G379200.1	Wheat	nucleus	44.69	39.18
TraesCS3A01G347500.1	Wheat	nucleus	44.9	39.15
Os05t0474800-01	Rice	nucleus	43.47	37.24
Zm00001d012482_P001	Maize	nucleus	44.69	36.93
HORVU3Hr1G088200.4	Barley	nucleus, plastid	45.1	36.89
Zm00001d038451_P001	Maize	nucleus	41.02	36.09
CDY36419	Canola	nucleus	33.06	35.6
CDX98138	Canola	nucleus	33.06	35.45
CDY33788	Canola	nucleus	31.43	34.84
GSMUA_Achr8P01790_001	Banana	nucleus	40.41	34.74
CDY53941	Canola	nucleus	30.41	33.86
CDY62213	Canola	nucleus	31.63	33.41
CDX96873	Canola	nucleus	31.63	33.26
CDY16122	Canola	nucleus	30.0	32.81
OQU78174	Sorghum	nucleus	43.06	32.51
CDY03003	Canola	nucleus	31.63	31.7
CDY45169	Canola	nucleus	31.43	31.69
CDX74281	Canola	nucleus	28.57	31.04
CDY42736	Canola	nucleus	33.27	30.81
CDY70490	Canola	nucleus	32.24	30.5
CDY37191	Canola	nucleus	30.2	30.45
CDY69527	Canola	nucleus	33.47	30.2
CDX94335	Canola	nucleus	31.02	29.57
CDX89336	Canola	nucleus	32.04	29.4
CDX89317	Canola	nucleus	31.63	29.03
CDX92808	Canola	nucleus	30.82	28.82
CDY46692	Canola	nucleus	30.82	28.76
CDX94303	Canola	nucleus	31.22	28.76
CDX97359	Canola	nucleus	31.43	28.68
CDY11947	Canola	nucleus	33.47	28.57
CDX91348	Canola	nucleus	23.06	28.11
CDX93073	Canola	nucleus	21.02	27.99
CDY14304	Canola	nucleus	30.82	27.61
CDY72350	Canola	nucleus	8.16	27.59
CDY36788	Canola	nucleus	35.1	27.56
CDX74976	Canola	nucleus	22.04	27.14
CDY49388	Canola	nucleus	36.33	26.53
CDY50038	Canola	nucleus	23.27	26.15
CDY36463	Canola	nucleus	19.18	23.56
CDY32799	Canola	nucleus	27.55	22.46
CDY62292	Canola	nucleus	9.39	22.12
CDY23265	Canola	nucleus	20.61	22.1
CDY62293	Canola	nucleus	8.98	21.67
CDX79729	Canola	nucleus	14.08	21.43
CDY46768	Canola	nucleus	14.08	21.36
CDY46769	Canola	nucleus	14.08	21.36
CDY47543	Canola	nucleus	12.24	21.2
CDY08253	Canola	nucleus	17.76	20.91
CDY26094	Canola	nucleus	17.76	20.91
CDY47546	Canola	nucleus	15.92	19.85
CDY13396	Canola	nucleus	20.82	19.21
CDY10548	Canola	nucleus	16.12	18.33
CDY59057	Canola	nucleus	16.53	18.12
CDY67588	Canola	nucleus	15.1	14.34
CDY54360	Canola	nucleus	15.92	14.03
CDX72277	Canola	nucleus	20.61	13.78
CDY52777	Canola	nucleus, plastid	3.67	10.53

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	MapMan:26.8.3.3.1	GO:A0A078FNI5	UniProt:A0A078FNI5	EnsemblPlants:CDY14459
ProteinID:CDY14459	ProteinID:CDY14459.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00079135001	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0004EAD1F5	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	SEG:seg	:	:	:	:

Description

BnaC03g21360DBnaC03g21360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNI5]

Coordinates

chrLK032043:-:451580..453866

Molecular Weight (calculated)

54049.3 Da

IEP (calculated)

8.528

GRAVY (calculated)

-0.980

Length

490 amino acids

Sequence
(BLAST)

001: MAASSLLPID NNTTRQNMSG SANWSRRSSA SLEDLEIPNF RSFAPSSVSI SPSTCFSPSV FLDSPAFVAS SANVLASPTT GALITNERNQ KNVTKEEKNN
101: NNNINFFDFS FQTQSSALSA PTTTATNSSI FQSQEQERKN QSDQWSQTLN NSNNQQAGSY NGREQRKGED GYNWRKYGQK QVKGSENPRS YYKCTFPSCP
201: TKKKVERSLE GQITEIVYKG SHNHPKPQST RRSSSSSSST FHSAVFNASL DNSFSHSDSL AIQQDDNTTS GSVGDDEFER GSSVVSREEE CGSEPEAKKW
301: KGESETNGGN GNGSKTVREP RIVVQTTSDI DILDDGYRWR KYGQKVVKGN PNPRSYYKCT TIGCPVRKHV ERASQDLRAV ITTYEGKHNH DVPAARGSGY
401: ATNRQVQDPS SAPIRPAAIA GHTNYTTSRP PYTLQMLQNN NNTNAGRFGY AMNSHNNIQT QQNEFVGGGF SRAKEEPNDE SSSFFDSFLS

Best Arabidopsis Sequence Match ( AT2G38470.1 )
(BLAST)

001: MAASFLTMDN SRTRQNMNGS ANWSQQSGRT STSSLEDLEI PKFRSFAPSS ISISPSLVSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNVTNQKG
101: INEGDKSNNN NFNLFDFSFH TQSSGVSAPT TTTTTTTTTT TTNSSIFQSQ EQQKKNQSEQ WSQTETRPNN QAVSYNGREQ RKGEDGYNWR KYGQKQVKGS
201: ENPRSYYKCT FPNCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS SSSTFHSAVY NASLDHNRQA SSDQPNSNNS FHQSDSFGMQ QEDNTTSDSV
301: GDDEFEQGSS IVSRDEEDCG SEPEAKRWKG DNETNGGNGG GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI GCPVRKHVER
401: ASHDMRAVIT TYEGKHNHDV PAARGSGYAT NRAPQDSSSV PIRPAAIAGH SNYTTSSQAP YTLQMLHNNN TNTGPFGYAM NNNNNNSNLQ TQQNFVGGGF
501: SRAKEEPNEE TSFFDSFMP

Arabidopsis Description

WRKY33WRKY33 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.