Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82333 | Canola | nucleus | 88.68 | 87.85 |
| CDY71738 | Canola | nucleus | 77.36 | 75.58 |
| CDY68488 | Canola | nucleus | 77.36 | 75.58 |
| CDX92261 | Canola | nucleus | 72.17 | 71.16 |
| CDX99326 | Canola | nucleus | 70.75 | 70.09 |
| AT3G18690.1 | Thale cress | nucleus | 69.81 | 66.67 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 41.51 | 44.44 |
| KRH64076 | Soybean | nucleus | 43.87 | 43.87 |
| KRH59551 | Soybean | plastid | 41.51 | 42.31 |
| KRH53873 | Soybean | nucleus | 43.4 | 41.44 |
| GSMUA_Achr10P... | Banana | nucleus | 38.21 | 39.51 |
| PGSC0003DMT400073800 | Potato | nucleus | 40.09 | 37.12 |
| Solyc11g005720.1.1 | Tomato | nucleus | 40.09 | 36.8 |
| GSMUA_Achr7P03200_001 | Banana | nucleus | 35.38 | 34.56 |
| GSMUA_Achr6P13020_001 | Banana | nucleus | 36.79 | 33.48 |
| CDY04618 | Canola | nucleus | 35.85 | 33.04 |
| CDY50839 | Canola | nucleus | 35.85 | 33.04 |
| HORVU5Hr1G007670.2 | Barley | nucleus | 37.26 | 32.92 |
| TraesCS5A01G027100.1 | Wheat | nucleus | 38.21 | 32.14 |
| TraesCS5B01G026300.1 | Wheat | nucleus | 36.32 | 31.69 |
| TraesCS5D01G034800.1 | Wheat | nucleus | 35.85 | 31.15 |
| TraesCS7D01G323700.1 | Wheat | peroxisome | 37.26 | 31.1 |
| TraesCS7A01G326900.1 | Wheat | peroxisome | 35.85 | 29.8 |
| TraesCS7B01G227600.1 | Wheat | peroxisome | 35.38 | 29.41 |
| Os08t0102900-00 | Rice | nucleus | 27.83 | 28.5 |
| CDY61066 | Canola | nucleus | 31.13 | 28.21 |
| Zm00001d025374_P001 | Maize | plastid | 34.91 | 27.82 |
| CDY00369 | Canola | nucleus | 30.19 | 27.35 |
| Zm00001d016748_P001 | Maize | nucleus | 35.85 | 26.48 |
| Os02t0539500-01 | Rice | nucleus | 33.96 | 26.18 |
| Zm00001d003743_P001 | Maize | nucleus | 36.79 | 24.76 |
| TraesCS2A01G298100.1 | Wheat | mitochondrion | 38.21 | 24.62 |
| TraesCS2B01G314600.1 | Wheat | plastid | 38.21 | 24.62 |
| TraesCS2D01G296200.1 | Wheat | mitochondrion | 38.21 | 24.62 |
| Zm00001d034979_P001 | Maize | nucleus, plastid | 34.91 | 22.84 |
| HORVU0Hr1G004060.1 | Barley | cytosol, plastid | 20.75 | 22.56 |
| OQU81546 | Sorghum | nucleus | 35.85 | 21.59 |
| EES13183 | Sorghum | nucleus, plastid | 31.6 | 21.27 |
| Os04t0417600-00 | Rice | cytosol, mitochondrion, nucleus | 30.19 | 15.38 |
Protein Annotations
| EnsemblPlants:CDX75979 | EnsemblPlantsGene:GSBRNA2T00124018001 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF26 | PFAM:PF05678 |
| ProteinID:CDX75979 | ProteinID:CDX75979.1 | SEG:seg | UniParc:UPI0004EDBB21 | MapMan:35.1 | : |
Description
BnaC03g40620D
Coordinates
chrLK031805:-:2365528..2366327
Molecular Weight (calculated)
22685.9 Da
IEP (calculated)
6.720
GRAVY (calculated)
-0.328
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSEHFAGG NPFDQQTPKR QLQICGPRPS PLSVNKDSHK IKKPPRHPAP PPQHHRDQAP LYPPREPVVI YAVSPKVVHT TTSDFMNVVQ RLTGISSEVF
101: LESRNDGDVS PAARLAATEN ASPRGGKEPV ESSTAMEEAA EFGCYAPGIL SPSPAMLPTV PAGIFSPMFH LGGLFSPALP PGLFSPAGLM SPGYASLASP
201: TFADFFSHIW DP
101: LESRNDGDVS PAARLAATEN ASPRGGKEPV ESSTAMEEAA EFGCYAPGIL SPSPAMLPTV PAGIFSPMFH LGGLFSPALP PGLFSPAGLM SPGYASLASP
201: TFADFFSHIW DP
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.