Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50839 | Canola | nucleus | 94.78 | 94.78 |
| AT1G21326.1 | Thale cress | nucleus | 67.83 | 65.27 |
| CDY00369 | Canola | nucleus | 62.61 | 61.54 |
| CDY61066 | Canola | nucleus | 61.3 | 60.26 |
| VIT_18s0166g00090.t01 | Wine grape | nucleus | 42.61 | 38.89 |
| KRH18125 | Soybean | nucleus | 40.0 | 38.33 |
| PGSC0003DMT400045282 | Potato | nucleus | 39.13 | 36.73 |
| KRH53420 | Soybean | nucleus | 39.57 | 36.55 |
| KRH15991 | Soybean | nucleus | 37.39 | 36.29 |
| Solyc06g060470.1.1 | Tomato | nucleus | 37.83 | 36.25 |
| CDX75979 | Canola | nucleus | 33.04 | 35.85 |
| CDX92261 | Canola | nucleus | 33.48 | 35.81 |
| CDX99326 | Canola | nucleus | 33.04 | 35.51 |
| CDX82333 | Canola | nucleus | 33.04 | 35.51 |
| CDY68488 | Canola | nucleus | 33.48 | 35.48 |
| CDY71738 | Canola | nucleus | 33.04 | 35.02 |
| KRH64520 | Soybean | nucleus, plastid | 36.52 | 35.0 |
| PGSC0003DMT400002024 | Potato | plastid | 39.57 | 32.97 |
Protein Annotations
| EnsemblPlants:CDY04618 | EnsemblPlantsGene:GSBRNA2T00119187001 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF26 | PFAM:PF05678 |
| ProteinID:CDY04618 | ProteinID:CDY04618.1 | SEG:seg | UniParc:UPI0004EE4F80 | MapMan:35.1 | : |
Description
BnaC05g16560D
Coordinates
chrLK031956:-:362163..362855
Molecular Weight (calculated)
25041.4 Da
IEP (calculated)
9.358
GRAVY (calculated)
-0.499
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNKSPRSKE ILGPRPTPLK IRKDSHKIIK KPPLAPQPLQ SQPPQLTERE PSQLLPPRGP VIIYTVSPKI IHTHPNNFMT LVQRLTGKTS TSTIPSSSSP
101: STLALDYTSA SRDTSAVFDA SRGSISPAAR YAAMEKANAS NELGFVGGVE STNQYYQHDY HQNRATERTG ILSPGPASLP QISPDFFSTV GASDPQGFSS
201: FFNDFSSILQ TTPTIPSPSS MDLFTNFFDC
101: STLALDYTSA SRDTSAVFDA SRGSISPAAR YAAMEKANAS NELGFVGGVE STNQYYQHDY HQNRATERTG ILSPGPASLP QISPDFFSTV GASDPQGFSS
201: FFNDFSSILQ TTPTIPSPSS MDLFTNFFDC
001: MDNRSPRSRG ILGPRPIPLK VRGDSHKIIK KPPLAPPHPQ PQPPQTHQQE PSQSRPPPGP VIIYTVSPRI IHTHPNNFMT LVQRLTGKTS TSTTSSSYSS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
Arabidopsis Description
F16F4.1 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMP5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.