Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400045282 | Potato | nucleus | 48.81 | 50.2 |
| Solyc06g060470.1.1 | Tomato | nucleus | 46.03 | 48.33 |
| KRH18125 | Soybean | nucleus | 45.24 | 47.5 |
| KRH15991 | Soybean | nucleus | 44.05 | 46.84 |
| PGSC0003DMT400002024 | Potato | plastid | 50.79 | 46.38 |
| KRH53420 | Soybean | nucleus | 43.65 | 44.18 |
| CDY04618 | Canola | nucleus | 38.89 | 42.61 |
| Bra025892.1-P | Field mustard | nucleus | 38.49 | 42.17 |
| CDY50839 | Canola | nucleus | 38.49 | 42.17 |
| AT1G21326.1 | Thale cress | nucleus | 38.89 | 41.0 |
| KRH64520 | Soybean | nucleus, plastid | 36.51 | 38.33 |
| Bra012276.1-P | Field mustard | plastid | 26.98 | 37.99 |
| CDY61066 | Canola | nucleus | 34.92 | 37.61 |
| CDY00369 | Canola | nucleus | 34.52 | 37.18 |
Protein Annotations
| ArrayExpress:VIT_18s0166g00090 | EMBL:AM484456 | EMBL:FN596264 | EnsemblPlants:VIT_18s0166g00090.t01 | EnsemblPlantsGene:VIT_18s0166g00090 | EntrezGene:100854780 |
| InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF26 | PFAM:PF05678 | ProteinID:CAN66427 | ProteinID:CAN66427.1 |
| ProteinID:CCB58945 | ProteinID:CCB58945.1 | RefSeq:XP_003634495 | RefSeq:XP_003634495.1 | RefSeq:XP_010664970.1 | SEG:seg |
| UniParc:UPI000152265F | UniProt:A5C6Y5 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr18:+:14033533..14034350
Molecular Weight (calculated)
27077.1 Da
IEP (calculated)
8.894
GRAVY (calculated)
-0.311
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSADFSGGK SPRRELLGPR PTPLKVRKDS HKIRKPPVVP QPQAQHPPPV IIYTVSPKII HTQPSEFMTL VQRLTGLSSS SSSSAPLDSG AVSPAARFAS
101: IEKTKVSAEE EKKKKMQSSG DVDVVEGIEI GGGVERSGWF PGILSPGPSS LPAISPNFFS PGFDPYSLNI FHDFSPAVHG NKNYIEGSFM PSPSIFGNKS
201: FIEGSFMPSP SIFGNKSLIE GSFMPSPSTF LSTPHNPSPT ASLDLFNNFL DF
101: IEKTKVSAEE EKKKKMQSSG DVDVVEGIEI GGGVERSGWF PGILSPGPSS LPAISPNFFS PGFDPYSLNI FHDFSPAVHG NKNYIEGSFM PSPSIFGNKS
201: FIEGSFMPSP SIFGNKSLIE GSFMPSPSTF LSTPHNPSPT ASLDLFNNFL DF
001: MDNRSPRSRG ILGPRPIPLK VRGDSHKIIK KPPLAPPHPQ PQPPQTHQQE PSQSRPPPGP VIIYTVSPRI IHTHPNNFMT LVQRLTGKTS TSTTSSSYSS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
Arabidopsis Description
F16F4.1 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMP5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.