Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61066 | Canola | nucleus | 97.01 | 97.01 |
| Bra012276.1-P | Field mustard | plastid | 70.51 | 92.18 |
| CDY04618 | Canola | nucleus | 61.54 | 62.61 |
| CDY50839 | Canola | nucleus | 59.83 | 60.87 |
| AT1G21326.1 | Thale cress | nucleus | 60.68 | 59.41 |
| KRH18125 | Soybean | nucleus | 37.18 | 36.25 |
| VIT_18s0166g00090.t01 | Wine grape | nucleus | 37.18 | 34.52 |
| PGSC0003DMT400045282 | Potato | nucleus | 35.9 | 34.29 |
| KRH15991 | Soybean | nucleus | 34.19 | 33.76 |
| Solyc06g060470.1.1 | Tomato | nucleus | 34.62 | 33.75 |
| CDY68488 | Canola | nucleus | 29.06 | 31.34 |
| KRH53420 | Soybean | nucleus | 33.33 | 31.33 |
| CDY71738 | Canola | nucleus | 28.63 | 30.88 |
| PGSC0003DMT400002024 | Potato | plastid | 36.32 | 30.8 |
| CDX99326 | Canola | nucleus | 27.78 | 30.37 |
| CDX82333 | Canola | nucleus | 27.78 | 30.37 |
| CDX92261 | Canola | nucleus | 27.78 | 30.23 |
| CDX75979 | Canola | nucleus | 27.35 | 30.19 |
| KRH64520 | Soybean | nucleus, plastid | 29.49 | 28.75 |
Protein Annotations
| EnsemblPlants:CDY00369 | EnsemblPlantsGene:GSBRNA2T00109983001 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF26 | PFAM:PF05678 |
| ProteinID:CDY00369 | ProteinID:CDY00369.1 | SEG:seg | UniParc:UPI0004EE6D3D | MapMan:35.1 | : |
Description
BnaC07g14570D
Coordinates
chrLK031918:-:264899..265603
Molecular Weight (calculated)
25707.5 Da
IEP (calculated)
8.232
GRAVY (calculated)
-0.545
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNRWPKSKE ILGPRPPPLK IRKESHKIIK KPPLVPQPRL QPPEPAPPQL QQQEPMQSQP PRGPVIIYTV SPKIIHTHPN NFMALVQRLT GKTCASTTSS
101: SASQSILAPN NMSATVDTSC SSLSPAARYV VMEKDNASNE VGFVGGVETT DQSYYYHHHQ NRVMDIPNSY NGGILPPDPT SLPLTSQEFL STVAPPNDPQ
201: GLSALFSDFN SILQTSPPKI PSPSMDLFNN FFDS
101: SASQSILAPN NMSATVDTSC SSLSPAARYV VMEKDNASNE VGFVGGVETT DQSYYYHHHQ NRVMDIPNSY NGGILPPDPT SLPLTSQEFL STVAPPNDPQ
201: GLSALFSDFN SILQTSPPKI PSPSMDLFNN FFDS
001: MDNRSPRSRG ILGPRPIPLK VRGDSHKIIK KPPLAPPHPQ PQPPQTHQQE PSQSRPPPGP VIIYTVSPRI IHTHPNNFMT LVQRLTGKTS TSTTSSSYSS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
Arabidopsis Description
F16F4.1 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMP5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.